Gene detail

Detail information of GWHGAAZE026030

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282629.2	0	PREDICTED: probable L-type lectin-domain containing receptor kinase S.7 [Vitis vinifera]
COG	YP_003098444.1	3E-26	serine/threonine protein kinase
Swissprot	tr\|Q9FG33\|LRKS5_ARATH	6E-123	Probable L-type lectin-domain containing receptor kinase S.5 (Precursor)
trEMBL	tr\|F6H315\|F6H315_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46793.1}
TAIR10	AT5G55830.1	6E-101	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	72085606	72089254	-
GWHAAZE00000007	mRNA	72085606	72089254	-
GWHAAZE00000007	exon	72085606	72086459	-
GWHAAZE00000007	exon	72086617	72087351	-
GWHAAZE00000007	exon	72088948	72089254	-
GWHAAZE00000007	CDS	72088948	72089254	-
GWHAAZE00000007	CDS	72086617	72087351	-
GWHAAZE00000007	CDS	72085606	72086459	-

Transcript Sequence
>GWHTAAZE026064 ATGAGTTGTTCAAATAACAGCAAACTAATATGTATGGGTTCAGTTAATGCAAGCACTAATGGGAGTCTTTACTTAACAAAAGAGAACCAAGATGAGATAAATCAGATTGGAAGAGTACTGTATAGACAACCTGGACTTGCATGGCCAGCTTCTTTCTCTACTGCTTTCACAGTTGTTATTGAAACTCAATACCCAAATTCTTCGCGATCCGGCGATGGTATGTCTTTCATCATTGCTCAGGACGACAAGCCTTCGCCATCGGAAAGTTATGGCTCTTATATGGGAATTCTTGATGCTTCGACTCAAGGCGGGTTTCTTAGACAACTGGCAGTGGAGCTAGACACATACAAAAATGAAGATGAACCAGATGGGAACCACATAGCCATCGACACCATTAGCGTAAAAAATTCCCTTGCAATAAAAAGCCTCAACAGCTTTGGAATCAACCTCAAGAGTGGAAAAGAAATCGCCATTAACATCATTTATGAAGGTTGGAATAAAAGCCTACAAATTTATGCTGCATATAACGGAAATGCCCTCTCGCTCATCCTCAACCAAACAATAATCATGCAAAACACGGTCCCAAACCGCGTCTACTTGGGCTTCACCGCGTCCACAGGCTTTGTGTCTGAGACCCACCGTGTCCTTAGTTGGAATTTCACGTCCACGAAATTGCCAACGGAATCTCTGTATACAGACAGGGGAAATGGGAAAGGAAATAGGACAAAGTTGGTTTTGATTGTCGTGGTTCCAATTTTGGTGGGGTTTTTGGTTTTGGGGATTTTAGTGGGTCCCTTTGTTTATAGGGTCATTAGGAGAAAGAATGAGAGGAGTGGGAGGCAAGAGGATATGGAAATGTTGACAAGAAATGCAGCAAATACACCAACTATTTATAGTTACAAGAAGCTTTTGAAGGCTACTCATAAGTTTAATAAGGAGAATTTGTTGGGGAGTGGTGGATTTGGGAGTGTTTATAAAGGGATTTTGTTCGATCCTCCTACAACTATTGCTGTCAAGAAAATTTCAGCTAATTCAAGTCAAGGTGAGAGGGAGTATTTAGCAGAAATATGTACTATTGGGCGCTTAAGGCACAAAAACTTATTACAACTCCAAGGTTGGTGCCATGACCATGACCAACTCCTCCTAGTCTATGAATACATGCCCAACGGTAGCTTGGATCGATTCATTGGAAGAGCCTTTCTAGACTGGAGAACTCGATACAATATATTGACAGGGCTGGCGTCAGTGCTCGTCTACCTCCATGAAGAATGTGACAACCCTGTCGTACATAGAGACGTAAAGCCAAATAATGTCATGTTGGATTCTAACTACAACGCTCATTTGGGTGACTTTGGCCTTGCCAGGTTGCTCCAGAATGACACATCAGTCACAACCATGGTGGCAGGGACTCCAGGGTACCTGGCCCCAGAGGTGAGCTATACTGGTAGGGCCACGCCAGAGTCCGACGTATATAGCTTTGGAATGGTGGTACTAGAAGTGGTTTGTGGGAAGAGATCAAAGGGCATGATGGAAGAGAATAGTTTGGTGGATTTTGTGTGGAGTTTATATGAAAAGGGTGAATTGTTGAAGTGTGTGGATCAAATGCTTGAAGGTGAATTTTATGAGGAACAAGCGAGGAGGACTTTAATTGTAGGGCTTGCTTGCTTACATCCTGATTATATGTTGAGGCCAAGGATGAGAAAAATTGTTCAAATTTTCATGAACCCTGAGGAGCCTTTGATGAAATTGCCCGAGTCAAGGCCTAGCGCAATATATGTGTCATTGTACTCTTCTTCTAATTCAAATACGACTAATTTTGGCTCGAACAAAACTCCGGCTACTATAGGCTCCATGGAGTCCTTGCCTGACGAGATTTCTGTCTCATATGTCGCATGA

Network for GWHGAAZE026030

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	6	226	3.60E-41
PF00069.26	Pkinase	310	571	2.60E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.015
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.038
	SRR3591709	Stem	0.034
	SRR3591710	White floral bud	0.461
	SRR3591711	White flower	0.063
	SRR3591712	Green floral bud	0.029
	SRR3591713	Yellow flower	0.036
SRP173429	SRR8316895	Juvenile bud stage	0.028
	SRR8316896	Juvenile bud stage	0.078
	SRR8316897	Juvenile bud stage	0.283
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.115
	SRR8316901	Third green stage	0.101
	SRR8316898	Complete white stage	0.369
	SRR8316899	Complete white stage	0.117
	SRR8316903	Complete white stage	0.619
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.020
	SRR8316905	Silver flowering stage	0.001
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.074
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.100
	SRR6706287	Light intensity 50%	0.027
	SRR6706288	Light intensity 20%	0.052
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.114
	CNS0095593	Slightly white alabastrum(diploid) 2	0.033
	CNS0095594	Slightly white alabastrum(diploid) 3	0.196
	CNS0095595	Whole white alabastrum(diploid) 2	0.191
	CNS0095596	Whole white alabastrum(diploid) 3	0.073
	CNS0095597	Whole white alabastrum(diploid) 4	0.096
	CNS0095598	Silvery flower (diploied) 1	0.625
	CNS0095599	Silvery flower (diploied) 2	0.242
	CNS0095600	Silvery flower (diploied) 3	0.643
	CNS0095601	Golden flower (diploid) 1	0.093
	CNS0095602	Golden flower (diploid) 2	0.059
	CNS0095603	Golden flower (diploid) 3	0.161
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.036
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.082
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.052
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.171
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.289
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.179
	CNS0095610	Silvery flower (tetraploid) 1	0.121
	CNS0095611	Silvery flower (tetraploid) 2	0.051
	CNS0095612	Silvery flower (tetraploid) 3	0.015
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.032
	CNS0095615	Golden flower (tetraploid) 3	0.004
CRA001975	CRR073297	Stem 1	0.040
	CRR073298	Stem 2	0.022
	CRR073299	Stem 3	0.024
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.188
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.097
	CRR073304	Juvenile bud 2	0.168
	CRR073305	Juvenile bud 3	0.470
	CRR073306	Third green 1	0.026
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.188
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.036
	CRR073316	Gold flowering 2	0.204
	CRR073317	Gold flowering 3	0.048
	CRR073318	Tawny withering 1	0.040
	CRR073319	Tawny withering 2	0.073
	CRR073320	Tawny withering 3	0.055