Detail information of GWHGAAZE025964


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP18485.11.64657E-73unnamed protein product [Coffea canephora]
COGYP_864740.12E-1150S ribosomal protein L28
trEMBLtr|A0A068VCA3|A0A068VCA3_COFCA6E-74Coffea canephora DH200=94 genomic scaffold, scaffold_244 {ECO:0000313|EMBL:CDP18485.1}
TAIR10AT4G31460.14E-43Ribosomal L28 family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7096673570967208+
GWHAAZE00000007mRNA7096673570967208+
GWHAAZE00000007exon7096673570967208+
GWHAAZE00000007CDS7096673570967208+
Transcript Sequence

Network for GWHGAAZE025964

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00830.20Ribosomal_L2818562.90E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02902RP-L28, MRPL28, rpmB Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.241
SRR3591706second leaf20.714
SRR3591707mature leaf14.747
SRR3591708Shoot apex27.377
SRR3591709Stem20.048
SRR3591710White floral bud22.163
SRR3591711White flower34.828
SRR3591712Green floral bud27.793
SRR3591713Yellow flower32.578
SRP173429 SRR8316895Juvenile bud stage 14.447
SRR8316896Juvenile bud stage 23.629
SRR8316897Juvenile bud stage 11.504
SRR8316894Third green stage 8.718
SRR8316900Third green stage 25.658
SRR8316901Third green stage 25.886
SRR8316898Complete white stage 11.512
SRR8316899Complete white stage 27.982
SRR8316903Complete white stage 16.812
SRR8316902Silver flowering stage18.323
SRR8316904Silver flowering stage20.612
SRR8316905Silver flowering stage9.804
SRR8316906Gold flowering stage 23.035
SRR8316907Gold flowering stage 35.250
SRR8316908Gold flowering stage 28.382
SRP132670SRR6706286Control25.244
SRR6706287Light intensity 50%23.501
SRR6706288Light intensity 20%24.870
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.282
CNS0095593Slightly white alabastrum(diploid) 232.041
CNS0095594Slightly white alabastrum(diploid) 334.625
CNS0095595Whole white alabastrum(diploid) 224.578
CNS0095596Whole white alabastrum(diploid) 324.784
CNS0095597Whole white alabastrum(diploid) 417.848
CNS0095598Silvery flower (diploied) 123.562
CNS0095599Silvery flower (diploied) 221.492
CNS0095600Silvery flower (diploied) 327.590
CNS0095601Golden flower (diploid) 119.966
CNS0095602Golden flower (diploid) 221.885
CNS0095603Golden flower (diploid) 321.170
CNS0095604Slightly white alabastrum(tetraploid) 125.712
CNS0095605Slightly white alabastrum(tetraploid) 226.505
CNS0095606Slightly white alabastrum(tetraploid) 325.621
CNS0095607Whole white alabastrum(tetraploid) 118.415
CNS0095608Whole white alabastrum(tetraploid) 219.543
CNS0095609Whole white alabastrum(tetraploid) 322.022
CNS0095610Silvery flower (tetraploid) 137.846
CNS0095611Silvery flower (tetraploid) 228.476
CNS0095612Silvery flower (tetraploid) 317.472
CNS0095613Golden flower (tetraploid) 122.611
CNS0095614Golden flower (tetraploid) 230.571
CNS0095615Golden flower (tetraploid) 317.037
CRA001975CRR073297Stem 118.867
CRR073298Stem 223.260
CRR073299Stem 320.319
CRR073300Leaf 119.267
CRR073301Leaf 219.918
CRR073302Leaf 317.975
CRR073303Juvenile bud 121.416
CRR073304Juvenile bud 215.853
CRR073305Juvenile bud 318.290
CRR073306Third green 113.607
CRR073307Third green 212.661
CRR073308Third green 312.501
CRR073309Second white 115.947
CRR073310Second white 219.990
CRR073311Second white 320.367
CRR073312Silver flowering 119.138
CRR073313Silver flowering 215.451
CRR073314Silver flowering 310.885
CRR073315Gold flowering 118.969
CRR073316Gold flowering 222.769
CRR073317Gold flowering 312.698
CRR073318Tawny withering 130.400
CRR073319Tawny withering 228.588
CRR073320Tawny withering 342.178