Gene detail

Detail information of GWHGAAZE025963

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002308625.1	0	hypothetical protein POPTR_0006s26080g [Populus trichocarpa]
COG	YP_004959349.1	4E-16	serine/threonine protein kinase
Swissprot	tr\|P51568\|AFC3_ARATH	0	Serine/threonine-protein kinase AFC3
trEMBL	tr\|B9H9D5\|B9H9D5_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE92148.1}
TAIR10	AT4G32660.1	1E-167	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	70953229	70959362	+
GWHAAZE00000007	mRNA	70953229	70959362	+
GWHAAZE00000007	exon	70953229	70953309	+
GWHAAZE00000007	exon	70953411	70953528	+
GWHAAZE00000007	exon	70954198	70954224	+
GWHAAZE00000007	exon	70954313	70954466	+
GWHAAZE00000007	exon	70954562	70954610	+
GWHAAZE00000007	exon	70954932	70955046	+
GWHAAZE00000007	exon	70955226	70955317	+
GWHAAZE00000007	exon	70955414	70955561	+
GWHAAZE00000007	exon	70957056	70957120	+
GWHAAZE00000007	exon	70957212	70957309	+
GWHAAZE00000007	exon	70958152	70958254	+
GWHAAZE00000007	exon	70959064	70959362	+
GWHAAZE00000007	CDS	70953229	70953309	+
GWHAAZE00000007	CDS	70953411	70953528	+
GWHAAZE00000007	CDS	70954198	70954224	+
GWHAAZE00000007	CDS	70954313	70954466	+
GWHAAZE00000007	CDS	70954562	70954610	+
GWHAAZE00000007	CDS	70954932	70955046	+
GWHAAZE00000007	CDS	70955226	70955317	+
GWHAAZE00000007	CDS	70955414	70955561	+
GWHAAZE00000007	CDS	70957056	70957120	+
GWHAAZE00000007	CDS	70957212	70957309	+
GWHAAZE00000007	CDS	70958152	70958254	+
GWHAAZE00000007	CDS	70959064	70959207	+
GWHAAZE00000007	three_prime_UTR	70959208	70959362	+

Transcript Sequence
>GWHTAAZE025997 ATGGTGGCGATTGATATGGTGGAGGAGAAGGATCACTCGAGGAAACGGCGTCGTGTAGCCTGGGATGTCGCTCCTCCCGAGGCTGATGAGGGTGAGGTTCGGCCACCAGTGTTATGTCGCCACGTCTCACCACCGAAGAGGGAGGATGATCGCGAGGGACATTACATGTTTAATCTCGGCGAGAATCTTACTCCAAGATATAAAATACTCAGCAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAATGTTGGGATCGTCAAACACGAGAATATGTGGCAGTCAAAGTTATTCGAAGCATACGCAAGTATCGTGATGCAGCAATGATTGAAGTTGATGTACTTCAGCTTATTGCTAAGAACGATAAAGGCGGATCACACTGTGTCCAAATCCGGAACTGGTTTGATTACCGGAATCACATATGCATTGTGTTTGAGAAGCTTGGACCAAGTTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTTCCTGTGGATCTTGTTCGAGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATATATGCATGATTTACGCTTAATCCACACTGACCTGAAGCCAGAAAATATACTACTAGTGTCTTCTGAATATGTAAAGCTTCCTGGCTGCAAGAGGTTTTCTTCAGATGAAATGCATTTCAGGTGCTTGCCAAAGTCAAGTGCCATTAAGCTGATTGATTTTGGTAGTACTGCATTTGATAATCAGAATCATAGCTCCATTGTTTCCACAAGGCATTACAGAGCCCCCGAGGTTATTCTAGGGCTAGGATGGTCTTATCCATGCGATATATGGAGCGTGGGTTGTATACTTGTCGAACTCTGCTCTGGTGAAGCACTGTTCCAGACGCATGAAAATTTGGAGCATTTGGCAATGATGGAGAGGGTATTGGGACCTTTGCCAGAGCATATGATTCGAAAGGCAAACTGTGGTGCCGAAAAGTATTTCAAGCGGTCACGACTAAATTGGCCTGAAGGAGCAGTTTCAAGGGAGAGTATTAGGGCAGTTAAGAAGATAGACCGTTTGAAGAACATGATATCGGAAAATGCAGTGGGGAGGTCAAGATCTTGTCTTATAGAATTGCTGCATGGTTTATTGAAGTTCGATCCATCAGAGCGGCTCACGGCCCGACAAGCACTGGATCATCCCTTCTTTAGGAACCCACCAACTTGAGGAAGGATGAAACACCAATGTAAAGTTAAAATGTTTTTTCCTTGTGTACAATTTGTGTTTTGTTAGTTTAGTCTAATGCAACTGTTTTTTTGTGAATCCTTTGTTATGTGAAAGCGGGAACCATTTAACATCTAAAACTTTTAGGTCACTAGTTT

Network for GWHGAAZE025963

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	67	392	1.00E-51

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CLK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.247
	SRR3591706	second leaf	31.488
	SRR3591707	mature leaf	22.659
	SRR3591708	Shoot apex	41.854
	SRR3591709	Stem	41.799
	SRR3591710	White floral bud	31.144
	SRR3591711	White flower	30.696
	SRR3591712	Green floral bud	25.312
	SRR3591713	Yellow flower	25.840
SRP173429	SRR8316895	Juvenile bud stage	20.907
	SRR8316896	Juvenile bud stage	29.486
	SRR8316897	Juvenile bud stage	11.893
	SRR8316894	Third green stage	15.480
	SRR8316900	Third green stage	34.364
	SRR8316901	Third green stage	36.380
	SRR8316898	Complete white stage	15.107
	SRR8316899	Complete white stage	46.203
	SRR8316903	Complete white stage	25.777
	SRR8316902	Silver flowering stage	19.987
	SRR8316904	Silver flowering stage	25.856
	SRR8316905	Silver flowering stage	12.988
	SRR8316906	Gold flowering stage	42.274
	SRR8316907	Gold flowering stage	40.349
	SRR8316908	Gold flowering stage	38.977
SRP132670	SRR6706286	Control	24.463
	SRR6706287	Light intensity 50%	27.274
	SRR6706288	Light intensity 20%	26.540
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.095
	CNS0095593	Slightly white alabastrum(diploid) 2	28.597
	CNS0095594	Slightly white alabastrum(diploid) 3	28.384
	CNS0095595	Whole white alabastrum(diploid) 2	24.675
	CNS0095596	Whole white alabastrum(diploid) 3	24.664
	CNS0095597	Whole white alabastrum(diploid) 4	21.426
	CNS0095598	Silvery flower (diploied) 1	46.544
	CNS0095599	Silvery flower (diploied) 2	26.595
	CNS0095600	Silvery flower (diploied) 3	21.584
	CNS0095601	Golden flower (diploid) 1	24.915
	CNS0095602	Golden flower (diploid) 2	21.153
	CNS0095603	Golden flower (diploid) 3	21.179
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.404
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.915
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.927
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.025
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.155
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.207
	CNS0095610	Silvery flower (tetraploid) 1	29.693
	CNS0095611	Silvery flower (tetraploid) 2	24.490
	CNS0095612	Silvery flower (tetraploid) 3	28.582
	CNS0095613	Golden flower (tetraploid) 1	24.133
	CNS0095614	Golden flower (tetraploid) 2	25.290
	CNS0095615	Golden flower (tetraploid) 3	23.473
CRA001975	CRR073297	Stem 1	23.595
	CRR073298	Stem 2	19.630
	CRR073299	Stem 3	12.177
	CRR073300	Leaf 1	23.875
	CRR073301	Leaf 2	20.446
	CRR073302	Leaf 3	9.647
	CRR073303	Juvenile bud 1	12.826
	CRR073304	Juvenile bud 2	6.241
	CRR073305	Juvenile bud 3	12.302
	CRR073306	Third green 1	6.583
	CRR073307	Third green 2	5.032
	CRR073308	Third green 3	5.860
	CRR073309	Second white 1	7.876
	CRR073310	Second white 2	6.728
	CRR073311	Second white 3	6.979
	CRR073312	Silver flowering 1	5.973
	CRR073313	Silver flowering 2	6.748
	CRR073314	Silver flowering 3	4.666
	CRR073315	Gold flowering 1	6.879
	CRR073316	Gold flowering 2	10.327
	CRR073317	Gold flowering 3	5.346
	CRR073318	Tawny withering 1	14.840
	CRR073319	Tawny withering 2	13.000
	CRR073320	Tawny withering 3	15.179