Gene detail

Detail information of GWHGAAZE025954

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284227.1	7.8594E-130	PREDICTED: protein Mpv17 [Vitis vinifera]
Swissprot	tr\|Q9ZS51\|PMP22_ARATH	4E-14	Peroxisomal membrane protein PMP22
trEMBL	tr\|D7SUE6\|D7SUE6_VITVI	3E-130	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20895.3}
TAIR10	AT3G24570.1	4E-84	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	70717670	70723460	-
GWHAAZE00000007	mRNA	70717670	70723460	-
GWHAAZE00000007	exon	70723313	70723460	-
GWHAAZE00000007	exon	70721413	70721462	-
GWHAAZE00000007	exon	70720821	70720912	-
GWHAAZE00000007	exon	70717670	70718078	-
GWHAAZE00000007	CDS	70723313	70723460	-
GWHAAZE00000007	CDS	70721413	70721462	-
GWHAAZE00000007	CDS	70720821	70720912	-
GWHAAZE00000007	CDS	70717670	70718078	-

Transcript Sequence
>GWHTAAZE025988 ATGTTGAAGCTATGGAAATGGTACCAGAAATGCTTGGCCGTACATCCAGTTAAGACTCAGGTCATTAGCTCTGGTTTCATTTGGGGATTTGGTGATATTGCTGCCCAGGCGATTACTCATTCTACAAAACGCCACCAAATTGGTGTAAGGCATTGTAGCATGGTTTGGCCTGTTGAAGAAGTTTTGCAAAGCAATTGGGATGACGATAAAGAATTAAAGATCAACTGGAGACGTGTGGCTACAACAAGCCTGTTTGGGTTTGGATTTGTTGGACCAGTTGGCCATTTCTGGTATGAAGGGTTGGACCGACTTATAAGATTGCGGCTCCAACTGCCACCAAAATCTATTCGGTTCGTGGCTACAAAAGTAGCACTCGATGGGATCATATTTGGACCCTTGGATTTACTCGTGTTCTTCACGTACATGGGGTTTTCTACGGGAAAAAGCGTGGATCAAGTTAAGGAAGACGTAAAGAGGGACTTCCTTCCAGCCTTAATACTCGAGGGGGGCATATGGCCGATTGTTCAAGTGGCCAATTTCCGGTTTATACCAGTGAGGTACCAGCTACTATATGTGAACTTCTTTTGCTTGTTGGATAGCTCTTTTCTTTCATGGCTTGAGCAACAACAGGATGCTGCTTGGAAACAATGGTTCAAATCATTTCTTGATGTAAAAGAACAAAAAGGCCAAGGTGGGTAA

Network for GWHGAAZE025954

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04117.13	Mpv17_PMP22	144	204	6.30E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13348	MPV17	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.479
	SRR3591706	second leaf	14.709
	SRR3591707	mature leaf	11.009
	SRR3591708	Shoot apex	19.040
	SRR3591709	Stem	10.110
	SRR3591710	White floral bud	10.892
	SRR3591711	White flower	12.886
	SRR3591712	Green floral bud	16.156
	SRR3591713	Yellow flower	11.422
SRP173429	SRR8316895	Juvenile bud stage	11.702
	SRR8316896	Juvenile bud stage	16.921
	SRR8316897	Juvenile bud stage	8.396
	SRR8316894	Third green stage	7.880
	SRR8316900	Third green stage	20.321
	SRR8316901	Third green stage	18.221
	SRR8316898	Complete white stage	6.286
	SRR8316899	Complete white stage	22.707
	SRR8316903	Complete white stage	9.806
	SRR8316902	Silver flowering stage	5.118
	SRR8316904	Silver flowering stage	7.714
	SRR8316905	Silver flowering stage	4.049
	SRR8316906	Gold flowering stage	12.990
	SRR8316907	Gold flowering stage	14.220
	SRR8316908	Gold flowering stage	14.329
SRP132670	SRR6706286	Control	22.767
	SRR6706287	Light intensity 50%	22.168
	SRR6706288	Light intensity 20%	21.360
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.418
	CNS0095593	Slightly white alabastrum(diploid) 2	20.650
	CNS0095594	Slightly white alabastrum(diploid) 3	18.976
	CNS0095595	Whole white alabastrum(diploid) 2	15.305
	CNS0095596	Whole white alabastrum(diploid) 3	18.474
	CNS0095597	Whole white alabastrum(diploid) 4	11.077
	CNS0095598	Silvery flower (diploied) 1	13.704
	CNS0095599	Silvery flower (diploied) 2	11.454
	CNS0095600	Silvery flower (diploied) 3	13.209
	CNS0095601	Golden flower (diploid) 1	10.031
	CNS0095602	Golden flower (diploid) 2	10.994
	CNS0095603	Golden flower (diploid) 3	11.898
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.473
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.956
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.703
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.235
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.185
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.625
	CNS0095610	Silvery flower (tetraploid) 1	12.317
	CNS0095611	Silvery flower (tetraploid) 2	13.832
	CNS0095612	Silvery flower (tetraploid) 3	9.060
	CNS0095613	Golden flower (tetraploid) 1	5.575
	CNS0095614	Golden flower (tetraploid) 2	9.324
	CNS0095615	Golden flower (tetraploid) 3	6.576
CRA001975	CRR073297	Stem 1	14.213
	CRR073298	Stem 2	13.765
	CRR073299	Stem 3	14.071
	CRR073300	Leaf 1	14.207
	CRR073301	Leaf 2	14.679
	CRR073302	Leaf 3	13.659
	CRR073303	Juvenile bud 1	10.505
	CRR073304	Juvenile bud 2	12.659
	CRR073305	Juvenile bud 3	9.151
	CRR073306	Third green 1	5.128
	CRR073307	Third green 2	6.134
	CRR073308	Third green 3	5.583
	CRR073309	Second white 1	5.285
	CRR073310	Second white 2	5.954
	CRR073311	Second white 3	3.023
	CRR073312	Silver flowering 1	3.612
	CRR073313	Silver flowering 2	1.576
	CRR073314	Silver flowering 3	3.359
	CRR073315	Gold flowering 1	11.803
	CRR073316	Gold flowering 2	9.296
	CRR073317	Gold flowering 3	6.415
	CRR073318	Tawny withering 1	12.036
	CRR073319	Tawny withering 2	9.222
	CRR073320	Tawny withering 3	10.576