Detail information of GWHGAAZE025943


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284106.19.9489E-113PREDICTED: D-amino-acid transaminase, chloroplastic [Vitis vinifera]
COGNP_968611.11E-32branched-chain amino acid aminotransferase
Swissprottr|Q8L493|DAAA_ARATH8E-90D-amino-acid transaminase, chloroplastic {ECO:0000303|PubMed:18318836} (Precursor)
trEMBLtr|D7SUD3|D7SUD3_VITVI4E-113Putative uncharacterized protein {ECO:0000313|EMBL:CBI20882.3}
TAIR10AT5G57850.18E-55D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7057845470581118-
GWHAAZE00000007mRNA7057845470581118-
GWHAAZE00000007exon7058100070581118-
GWHAAZE00000007exon7057979670580171-
GWHAAZE00000007exon7057949670579667-
GWHAAZE00000007exon7057845470578604-
GWHAAZE00000007CDS7058100070581118-
GWHAAZE00000007CDS7057979670580171-
GWHAAZE00000007CDS7057949670579667-
GWHAAZE00000007CDS7057851070578604-
GWHAAZE00000007three_prime_UTR7057845470578509-
Transcript Sequence

Network for GWHGAAZE025943

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01063.20Aminotran_4301253.20E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18482ADCL Folate biosynthesis map00790

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.931
SRR3591706second leaf17.937
SRR3591707mature leaf14.383
SRR3591708Shoot apex17.293
SRR3591709Stem19.978
SRR3591710White floral bud41.131
SRR3591711White flower203.972
SRR3591712Green floral bud49.688
SRR3591713Yellow flower326.228
SRP173429 SRR8316895Juvenile bud stage 25.377
SRR8316896Juvenile bud stage 42.161
SRR8316897Juvenile bud stage 15.763
SRR8316894Third green stage 18.593
SRR8316900Third green stage 50.711
SRR8316901Third green stage 46.501
SRR8316898Complete white stage 33.196
SRR8316899Complete white stage 39.249
SRR8316903Complete white stage 51.590
SRR8316902Silver flowering stage71.427
SRR8316904Silver flowering stage80.032
SRR8316905Silver flowering stage46.197
SRR8316906Gold flowering stage 328.988
SRR8316907Gold flowering stage 229.843
SRR8316908Gold flowering stage 226.589
SRP132670SRR6706286Control77.909
SRR6706287Light intensity 50%74.444
SRR6706288Light intensity 20%75.004
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.804
CNS0095593Slightly white alabastrum(diploid) 224.242
CNS0095594Slightly white alabastrum(diploid) 324.779
CNS0095595Whole white alabastrum(diploid) 221.020
CNS0095596Whole white alabastrum(diploid) 326.697
CNS0095597Whole white alabastrum(diploid) 425.912
CNS0095598Silvery flower (diploied) 132.639
CNS0095599Silvery flower (diploied) 241.343
CNS0095600Silvery flower (diploied) 3141.329
CNS0095601Golden flower (diploid) 184.012
CNS0095602Golden flower (diploid) 2195.961
CNS0095603Golden flower (diploid) 3197.796
CNS0095604Slightly white alabastrum(tetraploid) 127.453
CNS0095605Slightly white alabastrum(tetraploid) 229.700
CNS0095606Slightly white alabastrum(tetraploid) 341.215
CNS0095607Whole white alabastrum(tetraploid) 127.978
CNS0095608Whole white alabastrum(tetraploid) 227.463
CNS0095609Whole white alabastrum(tetraploid) 361.799
CNS0095610Silvery flower (tetraploid) 1104.082
CNS0095611Silvery flower (tetraploid) 2146.693
CNS0095612Silvery flower (tetraploid) 3127.766
CNS0095613Golden flower (tetraploid) 1133.785
CNS0095614Golden flower (tetraploid) 2157.184
CNS0095615Golden flower (tetraploid) 3157.676
CRA001975CRR073297Stem 171.929
CRR073298Stem 268.376
CRR073299Stem 385.209
CRR073300Leaf 149.699
CRR073301Leaf 251.308
CRR073302Leaf 349.053
CRR073303Juvenile bud 142.498
CRR073304Juvenile bud 252.579
CRR073305Juvenile bud 345.747
CRR073306Third green 171.616
CRR073307Third green 257.234
CRR073308Third green 362.899
CRR073309Second white 185.012
CRR073310Second white 271.820
CRR073311Second white 365.885
CRR073312Silver flowering 167.672
CRR073313Silver flowering 271.569
CRR073314Silver flowering 377.938
CRR073315Gold flowering 119.010
CRR073316Gold flowering 224.574
CRR073317Gold flowering 324.808
CRR073318Tawny withering 124.836
CRR073319Tawny withering 223.313
CRR073320Tawny withering 320.300