Gene detail

Detail information of GWHGAAZE025939

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011048388.1	2.65516E-78	PREDICTED: protein tesmin/TSO1-like CXC 5 [Populus euphratica]
Swissprot	tr\|Q9SZD1\|TCX5_ARATH	1E-59	Protein tesmin/TSO1-like CXC 5
trEMBL	tr\|U5FHV8\|U5FHV8_POPTR	4E-78	Uncharacterized protein {ECO:0000313\|EMBL:ERP49854.1}
TAIR10	AT4G29000.1	3E-45	Tesmin/TSO1-like CXC domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	70527844	70533330	+
GWHAAZE00000007	mRNA	70527844	70533330	+
GWHAAZE00000007	exon	70527844	70528024	+
GWHAAZE00000007	exon	70529620	70529828	+
GWHAAZE00000007	exon	70531086	70531183	+
GWHAAZE00000007	exon	70531591	70531685	+
GWHAAZE00000007	exon	70531895	70531957	+
GWHAAZE00000007	exon	70532446	70532799	+
GWHAAZE00000007	exon	70533218	70533330	+
GWHAAZE00000007	CDS	70527844	70528024	+
GWHAAZE00000007	CDS	70529620	70529828	+
GWHAAZE00000007	CDS	70531086	70531183	+
GWHAAZE00000007	CDS	70531591	70531685	+
GWHAAZE00000007	CDS	70531895	70531957	+
GWHAAZE00000007	CDS	70532446	70532799	+
GWHAAZE00000007	CDS	70533218	70533330	+

Transcript Sequence
>GWHTAAZE025973 TATTGTGAGTGCTTTGCTTCTGGAATTTCTTGTGATGGTTGCAACTGCATAAATTGTCACAACAATGCTGAAAATGAGGCTGCTAGGCAAGAAGCAATTGAAGCAACCTTGGAGCGAAGTCGAAAAGCCTTGAGAGCAAAGATTGCTAACAATTCACATGGATCTCATGATGGTAGGGTAGGGAGTGAAGAGAGAAGAGCTCTTCTGCACGGAAACCATGCTAATGTTACGACCTACGTCCAACAGGCAGCTCATACGATCATCAATGGGGCCACTGAGTATTGTGGGTTTGGTACTCCTCCACCAACCAAGAAGAGAAGAACTCAGCAAATCACTTTTGGATCAACATCCAACGGTCAATCTTATAATAAAAGTGCAGAATTTCAAGAGGAAAATCATTTAACATCTTCTGATGCCTCTCCTCCCTCGTCATTTATCCGTCTATCTGCTGCTGCCAATTCAACATTGTTGAGACCTTCAAATATAAGGTCTCCATTAGCCGGTGTGATCAAACCACAAGATGTGAATGAGCTTTGCTCACTTTTGGTCACAGTTTCAGGTGAAGTTGCAAAGGCGCATGCAGATATGCATGCAACAAATGGACCAATTGAGTTAACCCAGATGGGCTATCCAATGGTAGGACTTGACAAGCAAGCAGAGACGGATCAAACTGAAACTTTTGTTGCTTCAACGACTCAACAGAGTAGAGATTCTAAAAAAGAAGATGATGCTCCACAAAAAAATGGAAACCATGTAGATAGAGTTGAAACAAATACTTGTGAATCAGATGAAGTTGATTTACAAAATGAAAAGGCATTATCTCCTAGGACGCTTACATTAATGTGTGATGAATGCGATTTAATTTTCACGGAAGAGAGAGCTGTTGATTCTTCTCATGTGAAGGAGGGTTTTATTGAGGCTTATGTGGAGCAAGAAAAGCTTGTCTTGACTAGATTATGCGAGTGTCTTAACAAGATCGTCACTTGTGGAAGCATAAAACAATCGACGTGGTCTTCTTCATTAGCCAGAGCTGAAATCACAAGCGAACGCGATCAAAATAAAGGACGATCTTCTAAAACTCATTTTTTCCAGTGGCAGTGTGATGTAATGTAA

Network for GWHGAAZE025939

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	CPP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.009
	SRR3591706	second leaf	1.165
	SRR3591707	mature leaf	0.681
	SRR3591708	Shoot apex	3.471
	SRR3591709	Stem	1.544
	SRR3591710	White floral bud	3.656
	SRR3591711	White flower	6.981
	SRR3591712	Green floral bud	2.225
	SRR3591713	Yellow flower	10.582
SRP173429	SRR8316895	Juvenile bud stage	2.498
	SRR8316896	Juvenile bud stage	5.228
	SRR8316897	Juvenile bud stage	1.834
	SRR8316894	Third green stage	1.825
	SRR8316900	Third green stage	4.352
	SRR8316901	Third green stage	3.743
	SRR8316898	Complete white stage	1.824
	SRR8316899	Complete white stage	6.284
	SRR8316903	Complete white stage	4.616
	SRR8316902	Silver flowering stage	4.841
	SRR8316904	Silver flowering stage	8.605
	SRR8316905	Silver flowering stage	3.130
	SRR8316906	Gold flowering stage	11.656
	SRR8316907	Gold flowering stage	9.317
	SRR8316908	Gold flowering stage	10.437
SRP132670	SRR6706286	Control	2.289
	SRR6706287	Light intensity 50%	2.529
	SRR6706288	Light intensity 20%	2.249
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.314
	CNS0095593	Slightly white alabastrum(diploid) 2	3.144
	CNS0095594	Slightly white alabastrum(diploid) 3	3.603
	CNS0095595	Whole white alabastrum(diploid) 2	2.505
	CNS0095596	Whole white alabastrum(diploid) 3	2.919
	CNS0095597	Whole white alabastrum(diploid) 4	3.330
	CNS0095598	Silvery flower (diploied) 1	4.996
	CNS0095599	Silvery flower (diploied) 2	3.823
	CNS0095600	Silvery flower (diploied) 3	5.648
	CNS0095601	Golden flower (diploid) 1	6.460
	CNS0095602	Golden flower (diploid) 2	5.857
	CNS0095603	Golden flower (diploid) 3	6.360
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.691
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.634
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.482
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.444
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.781
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.481
	CNS0095610	Silvery flower (tetraploid) 1	7.002
	CNS0095611	Silvery flower (tetraploid) 2	6.253
	CNS0095612	Silvery flower (tetraploid) 3	6.188
	CNS0095613	Golden flower (tetraploid) 1	6.533
	CNS0095614	Golden flower (tetraploid) 2	7.269
	CNS0095615	Golden flower (tetraploid) 3	7.592
CRA001975	CRR073297	Stem 1	2.844
	CRR073298	Stem 2	2.957
	CRR073299	Stem 3	2.122
	CRR073300	Leaf 1	2.385
	CRR073301	Leaf 2	1.930
	CRR073302	Leaf 3	0.981
	CRR073303	Juvenile bud 1	0.580
	CRR073304	Juvenile bud 2	0.841
	CRR073305	Juvenile bud 3	1.232
	CRR073306	Third green 1	1.491
	CRR073307	Third green 2	0.607
	CRR073308	Third green 3	0.793
	CRR073309	Second white 1	0.721
	CRR073310	Second white 2	1.190
	CRR073311	Second white 3	1.080
	CRR073312	Silver flowering 1	0.384
	CRR073313	Silver flowering 2	0.870
	CRR073314	Silver flowering 3	0.867
	CRR073315	Gold flowering 1	0.452
	CRR073316	Gold flowering 2	1.189
	CRR073317	Gold flowering 3	0.989
	CRR073318	Tawny withering 1	1.132
	CRR073319	Tawny withering 2	1.116
	CRR073320	Tawny withering 3	2.427