Detail information of GWHGAAZE025938


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007029455.10Eukaryotic release factor 1 (eRF1) family protein isoform 1 [Theobroma cacao]
COGYP_330901.12E-17cell division protein pelota
Swissprottr|Q9ZT87|PEL1_ARATH4E-146Protein PELOTA 1
trEMBLtr|A0A061EZ58|A0A061EZ58_THECC0Eukaryotic release factor 1 (ERF1) family protein isoform 1 {ECO:0000313|EMBL:EOY09958.1}
TAIR10AT4G27650.14E-119Eukaryotic release factor 1 (eRF1) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7048332270499916-
GWHAAZE00000007mRNA7048332270499916-
GWHAAZE00000007exon7049983470499916-
GWHAAZE00000007exon7049827770498352-
GWHAAZE00000007exon7049745270497526-
GWHAAZE00000007exon7049731570497371-
GWHAAZE00000007exon7049680070496845-
GWHAAZE00000007exon7049602670496144-
GWHAAZE00000007exon7049579570495846-
GWHAAZE00000007exon7049423970494314-
GWHAAZE00000007exon7049352970493604-
GWHAAZE00000007exon7049336070493392-
GWHAAZE00000007exon7049296570493033-
GWHAAZE00000007exon7049232470492430-
GWHAAZE00000007exon7048617770486249-
GWHAAZE00000007exon7048597270486010-
GWHAAZE00000007exon7048527670485370-
GWHAAZE00000007exon7048440670484512-
GWHAAZE00000007exon7048332270483395-
GWHAAZE00000007CDS7049983470499916-
GWHAAZE00000007CDS7049827770498352-
GWHAAZE00000007CDS7049745270497526-
GWHAAZE00000007CDS7049731570497371-
GWHAAZE00000007CDS7049680070496845-
GWHAAZE00000007CDS7049602670496144-
GWHAAZE00000007CDS7049579570495846-
GWHAAZE00000007CDS7049423970494314-
GWHAAZE00000007CDS7049352970493604-
GWHAAZE00000007CDS7049336070493392-
GWHAAZE00000007CDS7049296570493033-
GWHAAZE00000007CDS7049232470492430-
GWHAAZE00000007CDS7048617770486249-
GWHAAZE00000007CDS7048597270486010-
GWHAAZE00000007CDS7048527670485370-
GWHAAZE00000007CDS7048440670484512-
GWHAAZE00000007CDS7048332270483395-
Transcript Sequence

Network for GWHGAAZE025938

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03463.16eRF1_111111.50E-42
PF03464.16eRF1_21773083.90E-29
PF03465.16eRF1_33124101.10E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06965PELO, DOM34, pelA mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.929
SRR3591706second leaf11.453
SRR3591707mature leaf10.411
SRR3591708Shoot apex16.866
SRR3591709Stem20.220
SRR3591710White floral bud27.180
SRR3591711White flower22.890
SRR3591712Green floral bud32.831
SRR3591713Yellow flower25.537
SRP173429 SRR8316895Juvenile bud stage 13.231
SRR8316896Juvenile bud stage 19.219
SRR8316897Juvenile bud stage 9.980
SRR8316894Third green stage 8.490
SRR8316900Third green stage 25.642
SRR8316901Third green stage 24.059
SRR8316898Complete white stage 9.333
SRR8316899Complete white stage 28.704
SRR8316903Complete white stage 15.051
SRR8316902Silver flowering stage10.794
SRR8316904Silver flowering stage15.425
SRR8316905Silver flowering stage7.158
SRR8316906Gold flowering stage 23.587
SRR8316907Gold flowering stage 21.247
SRR8316908Gold flowering stage 23.276
SRP132670SRR6706286Control8.867
SRR6706287Light intensity 50%13.185
SRR6706288Light intensity 20%12.816
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.297
CNS0095593Slightly white alabastrum(diploid) 214.263
CNS0095594Slightly white alabastrum(diploid) 311.858
CNS0095595Whole white alabastrum(diploid) 213.994
CNS0095596Whole white alabastrum(diploid) 314.421
CNS0095597Whole white alabastrum(diploid) 413.423
CNS0095598Silvery flower (diploied) 112.976
CNS0095599Silvery flower (diploied) 214.543
CNS0095600Silvery flower (diploied) 318.319
CNS0095601Golden flower (diploid) 111.977
CNS0095602Golden flower (diploid) 218.598
CNS0095603Golden flower (diploid) 315.693
CNS0095604Slightly white alabastrum(tetraploid) 121.479
CNS0095605Slightly white alabastrum(tetraploid) 215.274
CNS0095606Slightly white alabastrum(tetraploid) 324.847
CNS0095607Whole white alabastrum(tetraploid) 114.383
CNS0095608Whole white alabastrum(tetraploid) 216.008
CNS0095609Whole white alabastrum(tetraploid) 325.699
CNS0095610Silvery flower (tetraploid) 122.199
CNS0095611Silvery flower (tetraploid) 222.644
CNS0095612Silvery flower (tetraploid) 320.945
CNS0095613Golden flower (tetraploid) 117.127
CNS0095614Golden flower (tetraploid) 220.644
CNS0095615Golden flower (tetraploid) 324.241
CRA001975CRR073297Stem 115.714
CRR073298Stem 212.826
CRR073299Stem 313.342
CRR073300Leaf 118.952
CRR073301Leaf 215.896
CRR073302Leaf 317.819
CRR073303Juvenile bud 122.077
CRR073304Juvenile bud 217.357
CRR073305Juvenile bud 317.082
CRR073306Third green 18.446
CRR073307Third green 25.858
CRR073308Third green 38.542
CRR073309Second white 114.880
CRR073310Second white 215.466
CRR073311Second white 313.171
CRR073312Silver flowering 111.459
CRR073313Silver flowering 210.529
CRR073314Silver flowering 314.372
CRR073315Gold flowering 113.397
CRR073316Gold flowering 214.819
CRR073317Gold flowering 310.431
CRR073318Tawny withering 113.783
CRR073319Tawny withering 216.487
CRR073320Tawny withering 319.902