Gene detail

Detail information of GWHGAAZE025912

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010049109.1	0	PREDICTED: carotenoid cleavage dioxygenase 8 homolog B, chloroplastic-like [Eucalyptus grandis]
COG	YP_001424409.1	5E-30	lignostilbene-alpha,beta-dioxygenase
Swissprot	tr\|Q8LIY8\|CCD8B_ORYSJ	0	Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic (Precursor)
trEMBL	tr\|A0A059CT69\|A0A059CT69_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW81572.1}
TAIR10	AT4G32810.1	1E-126	carotenoid cleavage dioxygenase 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	70094946	70098505	-
GWHAAZE00000007	mRNA	70094946	70098505	-
GWHAAZE00000007	exon	70094946	70095600	-
GWHAAZE00000007	exon	70095864	70095868	-
GWHAAZE00000007	exon	70096226	70096436	-
GWHAAZE00000007	exon	70096656	70096765	-
GWHAAZE00000007	exon	70097756	70098505	-
GWHAAZE00000007	CDS	70097756	70098505	-
GWHAAZE00000007	CDS	70096656	70096765	-
GWHAAZE00000007	CDS	70096226	70096436	-
GWHAAZE00000007	CDS	70095864	70095868	-
GWHAAZE00000007	CDS	70094946	70095600	-

Transcript Sequence
>GWHTAAZE025946 ATGCAGAGTGGCACGTACCTAAGGAATGGACCAGGGCTATGGCACCTAGGAGACTACAGTTTTCGCCACCTCTTCGATGGGTATGCCACCCTAGTCCGCCTCTACTTTGAGAACGGCCAATTAGTAATGGGTCACCGGCAAATCGAATCCGAGGCATACAAAGCCGCAAAAAAGAGCAACAAACTTTGTTACCGCGAATTTTCTGAAGTCCCAAAACACGATAATTTCTTGTCTTACATGGGCGAGCTAGCAAATCTGTTTTCTGGTGCATCTCTGACTGATAATGCCAACAATGGAGTGGTCAGGCTCGGCGATGGTCGAGTAGTTTGTCTAACTGAAACAATTAAAGGGTCAATTGTAGTCGACCCAAACACTTTGGACACCGTAGGGAAGTTTGAGTCCAGTGATTCACTGGGTGGGTTAGTTCACTCTGCTCACCCGATTGTAACCGAGTCAGAGTTTTTGACACTGTTGCCAGATCTAGTGAACCCAGGGTACTTGGTGGTGAGGATGGAGCCGGGGACAAATGAGAGGAAGGTGATTGGTCGGGTTAGTTGCAGGGGTAAGCCCTCACCGGGGAGGGTCCACTCGTTTCCGGTAACGGAGCATTATGTGATTGTACCCGAGATGCCTTTGAGGTGTTGTGCACAAAATTTACTAAAGGCTGAGCCCACACTACTATACAAGTTTCAGTGGCACCCGGAGTCCAAAGGGTTTATGCATGTTATGTGTAAAGCTAGTGGCTACATTTCATCGCTGACTGCTGTGAACATTACGCCGACACAATTCACGATCCTAGATAATCTCAGGCTAAACAACCTTCGAACATATACCGGCAATGATGTCTTGCCTGATGCTAGGGTTGGTCGATTTAAAATACCATTTGATGGGAGCCCAAAAGGCGAACTGGTTTCAGCACTAAATCCAGATGAACACGGAAGAGGCATGGACATGTGCAGCGTCAACCCAGCATTTTTAGGCAAGAAATACAGATATGCTTATGCCTGTGGCGCTGAAAGGCCTTGCAATTTCCCCAACACCCTCACTAAGGTATCTACACATGCAACTTACGTTGGTCTTATTCCCGATCAAAGGCTGGTTCGATGCACTGCTGGTGGCATTACTTTTGTGATTGCTGTCGTTTCAAACATAACATTTGATGATTTGTGCAAAGGAATCATTCTAAACAATCATTCCATATCCCTTGATCAGTCGTCGCTATGGTACTCCTTCAAGAACCAAGTGCAATGCATCCTCCGAAATGACCAAGATGTTTACTTAATGTTCCAATGCCAACGTATGCTCCGGTGCGAATTTGTTGATCTGGAGGTAAAGAGGAGTGTACTCACAAATGTAGTCGTTGATGGAATGCAATCGCCCAAGTCTATGAACTATAGCAATAATGGGCCATATCTTGTAGAGATTGAAAACCAAATCCGACCGACGAAGACGTACCTCACTGAACTATGGAGACAATATATTCATCGTGAGGAGCAGGTATTTAAAGGTGCCAAGGAGTTCAAAGAGGATCTGATAAAATACTCCATCTCATTGGGATTCTCATTTGACTACGTCTATAATGATAAAGACCGCGTCACAGCCAAGTGTTCGAGGAAAGAAGAGGATGGATGCGAGTGGCGAGTTCAAGCATCGAAAAATCGTGCCAATGGATTATTCTATATTCGGAAGCTCAATAACATTCACACATGCTCTGGTTTCTGCTTTTATTAG

Network for GWHGAAZE025912

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03055.16	RPE65	3	248	1.30E-34
PF03055.16	RPE65	264	358	1.20E-07
PF03108.16	DBD_Tnp_Mut	499	561	2.90E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17913	CCD8	Biosynthesis of secondary metabolites	map01110
K17913	CCD8	Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.882
	SRR3591706	second leaf	0.224
	SRR3591707	mature leaf	0.474
	SRR3591708	Shoot apex	0.304
	SRR3591709	Stem	0.483
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.085
	SRR3591712	Green floral bud	0.043
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.050
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.077
	SRR8316901	Third green stage	0.136
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.034
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.065
	CNS0095596	Whole white alabastrum(diploid) 3	0.060
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.011
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.031
	CRR073300	Leaf 1	0.054
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.088
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000