Gene detail

Detail information of GWHGAAZE025905

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281133.1	0	PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 [Vitis vinifera]
COG	YP_004775215.1	4E-67	RHS repeat-associated core domain-containing protein
Swissprot	tr\|O82318\|Y2579_ARATH	0	Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 (Precursor)
trEMBL	tr\|D7SU88\|D7SU88_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20837.3}
TAIR10	AT2G25790.1	0	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69962140	69965257	+
GWHAAZE00000007	mRNA	69962140	69965257	+
GWHAAZE00000007	exon	69962140	69964627	+
GWHAAZE00000007	exon	69964893	69965257	+
GWHAAZE00000007	CDS	69962140	69964627	+
GWHAAZE00000007	CDS	69964893	69965257	+

Transcript Sequence
>GWHTAAZE025939 ATGGCCAAGATCACTACTCGCCAAAAACTCTTCATCTTCCTCCTGTTCTTCATTTTTAACTTGTACAAATCCGAAGGGTCAGATTATGAGCTCTTATTATCCTTCAAATCCTTCCTCAATGACCCACTAAATTCCTTCTCCAGTTGGAATTCCTCTCTCCCCTTTTGCCATTGGAATGGAATTTCCTGCCTTAATTCCTCCCATGTCAACAAAATTCACCTCCCCGGAAGGAAAATTTCCGGAAAACTTTCTGAATCAATTTTCAATTTGCCTTTCCTCGAATCACTCGATCTCTCGAATAATCAGCTCATGGGTGGAATTCCAACAAACTTTTCCCCTTCCTTTTCGCTTAAATTCCTCAACTTAAGCAACAACAACTTCACTGGTCCATTGCCTAAATCCTCGATTCGTCAACTCAACTCGATGGACCTATCAAACAACTTGCTTTCGGGGGAAATTCCAGAGGAGATCGGATTCTTTTCCGGCCTTAAATTTCTTGATCTTGGAGGGAATTCGCTTGTGGGACAAATTCCAAATTCCATTACAAATTTGAAGAGTTTGGAATTCTTGACTTTGGCTTCGAATCAGCTCGTTGGCGAAATTCCACCCGAATTAGGCCTAATGAAGAGCTTGAAGTTTATTTACTTGGGATATAACAATCTTTCGGGCGGAATTCCAAAGGAAATTGGTGAGTTAACTTTTCTCAATCATCTTAATCTTGTTAACAACAATCTCACGGGCCAAATCCCACCGTCCATTGGTAACCTCACCGATCTCCGTTACCTTTTCTTGTACTTAAACAAGCTCACTGGTTCGATTCCTCCCTCCATTTTCGGCCTTAAAAACTTAATATCTCTTGATTTAAGCGATAATTTTCTCTCGGGAAAAATTCCAGAACTTGTTGGCCAGTTGGAAAACTTGGAAATTCTTCATTTGTTTTCCAACGAATTTTCCGGGAAAATCCCGAGTGGATTATCTAATTTGCCTCGCCTGCAAATACTTCAGTTATGGTCAAACAAGTTGACCGGGGAGATACCGAAAACCTTAGGAAAACAGAACAATCTCTCTGTTTTGGACCTTTCCACAAATAATCTCGCCGGAGTAATTCCGGCCAGCCTATGCAATTCCGGACAACTTTTCAAACTCATCCTCTTTTCAAATTCCCTTGAAGGAGAAATTCCCAGTGGCTTGAGCAATTGCAAGAGCTTGCAAAGACTACGACTTCAAAACAACCGGCTCTCCGGCGAGTTGCCACCCGAATTTACGAAACTGCCCCTAGTTTACTTCCTCGATATCTCCAGTAACAATTTTTCCGGCCACAGGAAATGGCACATGCCAGAACTCGAAATGCTGAATTTGGCAAGAAACAGATTCTCAGGGGAATTGCCAGATTCTTTCGGCAGTAAAAAGCTCGAAAACTTAGACTTGTCGGAAAATGGATTCTCCGGGTACATTCCGGCGAGTTTCGGTAATTTTTCGGAGCTAATGCAGTTGAATTTAAGCAAAAACAATCTCTTGGGTAAAATCCCAGATGAATTATCTTCTTGTAAAAAGCTTGTGAGTTTAGACCTTAGCAATAATCAACTAGTTGGACAAATTCCCACTAGCTTCTCTCAAATGCCAGTTCTTAGCCAACTTGATTTGTCTATGAACAAATTATCCGGCAAAATCCCGGAAAATTTAGGTGAAGTGGAATCCCTTGTCGTGGTAAACATTTCCCACAATCATTTCCATGGAAATTTACCCTCCACAGGTGCATTTTTCGACATTAATTTAACCGCGATTAATGGTAACAATCTTTGTGGTGGAAATAAAGTTATTGGTTTACCACCGTGTAAAAATGTCGCTAAGGTACCCATTTGGAGCTTGTTCATTGTTGTAGTTGTGGCGGTTATACTTGGAGTTTCTTTCATTATATTTTTCGTTCGAAGCAAGAATGAAAAATTAGTGATCAAGAGAGTTGAAAATATTGAGGGTGGAAATTGGGATTTGCAATTCTTCTGTTTGGATCATTCGAAGTCAATTACAATGCATGATATTTTATCGTGTGTTAGGGAAGGGAATTTTGTTTCCTCAGAATTTGTTGCCAGGGAAATGAATGCATTGAGTTTGATTCCATCTGAGTGTTGGAAAGAATTGGCGGAAAATATTGGAAGGATTCGGGGACATCCAAATATTGTGAAATTTATTGCAATTTGTAGGTCGGAAAAATGTGGATTTCTTTTGTACGAATTTGTTCAAGGGAATATTTTGAGTGAAGCTATTAGAGGGTTAAATTGGGAAAGAAGGCGAAAAATTGCAGTTGGGATTGCGAAAGGTATTCAATATATGCATTGCTGGTATTCGGATCGCATTTTAGTGGGTGAGCTGTTGCCAGATAAAATTATCGTCGACGGCAAAGATGAGCCTAGGCTGAGATTGAGCTTTCCCCGGCCGGCGATTGGTTTGGACACGAAATGTGGGGTGTCTTTAGCATACGTTGCACCAGAAACAAACGAAAGCAAAGAAATAACAGACAAGAGTGATATCTATGGATTTGGGCTCATCCTTATTCAATTACTCACCGGAAGAACTCCGGTCGATGCTGAGTTTGGTTTGCATGGAAGCATTGTAGAATGGGCCCGGTATTGTTACTCGGACTGTCATCTTGACGCGTGGATCGATCCAACAGTCAAGGGACACCCATCGGATGATCAAGCGTCTGAGATCGTGAGGACCATGAATCTAGCTCTCCGGTGCACCACTGTTGACCCAGCGGCAAGACCATGTGCTAGAGACATAGCCAAAAGCCTAGAGTCTATTAGCAGCTCAAGTTCTTGTGTTTTAGGTTTGAAGTTTCCTTCCACTATCTAA

Network for GWHGAAZE025905

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	27	63	1.80E-09
PF00560.34	LRR_1	93	112	1.2
PF00560.34	LRR_1	163	184	0.77
PF00560.34	LRR_1	282	299	1.2
PF13855.7	LRR_8	329	389	3.40E-07
PF13855.7	LRR_8	470	529	7.00E-10
PF00069.26	Pkinase	717	929	7.90E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_Singleton

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.921
	SRR3591706	second leaf	2.402
	SRR3591707	mature leaf	0.310
	SRR3591708	Shoot apex	4.052
	SRR3591709	Stem	3.972
	SRR3591710	White floral bud	0.569
	SRR3591711	White flower	0.520
	SRR3591712	Green floral bud	0.545
	SRR3591713	Yellow flower	0.033
SRP173429	SRR8316895	Juvenile bud stage	0.678
	SRR8316896	Juvenile bud stage	0.831
	SRR8316897	Juvenile bud stage	0.156
	SRR8316894	Third green stage	0.511
	SRR8316900	Third green stage	0.616
	SRR8316901	Third green stage	0.570
	SRR8316898	Complete white stage	0.015
	SRR8316899	Complete white stage	1.988
	SRR8316903	Complete white stage	0.137
	SRR8316902	Silver flowering stage	0.026
	SRR8316904	Silver flowering stage	0.013
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.035
SRP132670	SRR6706286	Control	0.384
	SRR6706287	Light intensity 50%	0.378
	SRR6706288	Light intensity 20%	0.362
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.348
	CNS0095593	Slightly white alabastrum(diploid) 2	0.600
	CNS0095594	Slightly white alabastrum(diploid) 3	0.457
	CNS0095595	Whole white alabastrum(diploid) 2	0.418
	CNS0095596	Whole white alabastrum(diploid) 3	0.286
	CNS0095597	Whole white alabastrum(diploid) 4	0.348
	CNS0095598	Silvery flower (diploied) 1	1.640
	CNS0095599	Silvery flower (diploied) 2	0.451
	CNS0095600	Silvery flower (diploied) 3	0.364
	CNS0095601	Golden flower (diploid) 1	0.693
	CNS0095602	Golden flower (diploid) 2	0.601
	CNS0095603	Golden flower (diploid) 3	0.643
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.085
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.398
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.455
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.537
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.647
	CNS0095610	Silvery flower (tetraploid) 1	0.035
	CNS0095611	Silvery flower (tetraploid) 2	0.448
	CNS0095612	Silvery flower (tetraploid) 3	0.220
	CNS0095613	Golden flower (tetraploid) 1	0.018
	CNS0095614	Golden flower (tetraploid) 2	0.152
	CNS0095615	Golden flower (tetraploid) 3	0.028
CRA001975	CRR073297	Stem 1	1.298
	CRR073298	Stem 2	0.964
	CRR073299	Stem 3	1.485
	CRR073300	Leaf 1	0.525
	CRR073301	Leaf 2	0.611
	CRR073302	Leaf 3	0.688
	CRR073303	Juvenile bud 1	0.685
	CRR073304	Juvenile bud 2	0.270
	CRR073305	Juvenile bud 3	0.507
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.054
	CRR073308	Third green 3	0.091
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.168
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.559
	CRR073316	Gold flowering 2	0.381
	CRR073317	Gold flowering 3	0.782
	CRR073318	Tawny withering 1	13.112
	CRR073319	Tawny withering 2	6.104
	CRR073320	Tawny withering 3	16.839