Detail information of GWHGAAZE025902


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP08183.10unnamed protein product [Coffea canephora]
COGYP_003161387.12E-12serine/threonine protein kinase with PASTA sensor(s)
Swissprottr|P42158|KC1D_ARATH2E-57Casein kinase I isoform delta-like
trEMBLtr|A0A068UKT4|A0A068UKT4_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_31 {ECO:0000313|EMBL:CDP08183.1}
TAIR10AT2G25760.10Protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6988476169893852-
GWHAAZE00000007mRNA6988476169893852-
GWHAAZE00000007exon6989349469893852-
GWHAAZE00000007exon6989002769890158-
GWHAAZE00000007exon6988985569889928-
GWHAAZE00000007exon6988942069889489-
GWHAAZE00000007exon6988926469889319-
GWHAAZE00000007exon6988878269888853-
GWHAAZE00000007exon6988793969888033-
GWHAAZE00000007exon6988776169887827-
GWHAAZE00000007exon6988692669887055-
GWHAAZE00000007exon6988662969886847-
GWHAAZE00000007exon6988640969886551-
GWHAAZE00000007exon6988608269886256-
GWHAAZE00000007exon6988558469885674-
GWHAAZE00000007exon6988507769885234-
GWHAAZE00000007exon6988476169884967-
GWHAAZE00000007five_prime_UTR6989357569893852-
GWHAAZE00000007CDS6989349469893574-
GWHAAZE00000007CDS6989002769890158-
GWHAAZE00000007CDS6988985569889928-
GWHAAZE00000007CDS6988942069889489-
GWHAAZE00000007CDS6988926469889319-
GWHAAZE00000007CDS6988878269888853-
GWHAAZE00000007CDS6988793969888033-
GWHAAZE00000007CDS6988776169887827-
GWHAAZE00000007CDS6988692669887055-
GWHAAZE00000007CDS6988662969886847-
GWHAAZE00000007CDS6988640969886551-
GWHAAZE00000007CDS6988608269886256-
GWHAAZE00000007CDS6988558469885674-
GWHAAZE00000007CDS6988507769885234-
GWHAAZE00000007CDS6988476169884967-
Transcript Sequence

Network for GWHGAAZE025902

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase362702.50E-16
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCK1_CK1-Pl

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.638
SRR3591706second leaf17.322
SRR3591707mature leaf20.962
SRR3591708Shoot apex16.020
SRR3591709Stem31.501
SRR3591710White floral bud16.704
SRR3591711White flower19.872
SRR3591712Green floral bud11.852
SRR3591713Yellow flower17.573
SRP173429 SRR8316895Juvenile bud stage 31.630
SRR8316896Juvenile bud stage 43.534
SRR8316897Juvenile bud stage 22.433
SRR8316894Third green stage 19.048
SRR8316900Third green stage 22.936
SRR8316901Third green stage 28.567
SRR8316898Complete white stage 11.435
SRR8316899Complete white stage 36.609
SRR8316903Complete white stage 29.406
SRR8316902Silver flowering stage11.514
SRR8316904Silver flowering stage21.062
SRR8316905Silver flowering stage8.198
SRR8316906Gold flowering stage 30.648
SRR8316907Gold flowering stage 29.856
SRR8316908Gold flowering stage 31.488
SRP132670SRR6706286Control29.366
SRR6706287Light intensity 50%31.686
SRR6706288Light intensity 20%33.754
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.527
CNS0095593Slightly white alabastrum(diploid) 26.042
CNS0095594Slightly white alabastrum(diploid) 37.784
CNS0095595Whole white alabastrum(diploid) 27.777
CNS0095596Whole white alabastrum(diploid) 35.348
CNS0095597Whole white alabastrum(diploid) 46.735
CNS0095598Silvery flower (diploied) 120.544
CNS0095599Silvery flower (diploied) 211.715
CNS0095600Silvery flower (diploied) 314.478
CNS0095601Golden flower (diploid) 116.840
CNS0095602Golden flower (diploid) 224.929
CNS0095603Golden flower (diploid) 324.412
CNS0095604Slightly white alabastrum(tetraploid) 19.800
CNS0095605Slightly white alabastrum(tetraploid) 27.163
CNS0095606Slightly white alabastrum(tetraploid) 318.536
CNS0095607Whole white alabastrum(tetraploid) 17.074
CNS0095608Whole white alabastrum(tetraploid) 24.039
CNS0095609Whole white alabastrum(tetraploid) 312.067
CNS0095610Silvery flower (tetraploid) 125.194
CNS0095611Silvery flower (tetraploid) 219.829
CNS0095612Silvery flower (tetraploid) 313.675
CNS0095613Golden flower (tetraploid) 110.465
CNS0095614Golden flower (tetraploid) 218.966
CNS0095615Golden flower (tetraploid) 319.269
CRA001975CRR073297Stem 138.568
CRR073298Stem 223.825
CRR073299Stem 34.154
CRR073300Leaf 124.952
CRR073301Leaf 222.654
CRR073302Leaf 32.476
CRR073303Juvenile bud 13.582
CRR073304Juvenile bud 21.256
CRR073305Juvenile bud 35.000
CRR073306Third green 10.981
CRR073307Third green 20.139
CRR073308Third green 30.860
CRR073309Second white 11.692
CRR073310Second white 22.294
CRR073311Second white 32.348
CRR073312Silver flowering 12.351
CRR073313Silver flowering 21.041
CRR073314Silver flowering 30.842
CRR073315Gold flowering 12.366
CRR073316Gold flowering 26.378
CRR073317Gold flowering 31.672
CRR073318Tawny withering 15.049
CRR073319Tawny withering 26.150
CRR073320Tawny withering 35.568