Gene detail

Detail information of GWHGAAZE025890

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADB93072.1	3.17718E-83	profilin-1 [Jatropha curcas]
Swissprot	tr\|O82572\|PROF1_RICCO	3E-84	Profilin-1
trEMBL	tr\|D6BRE6\|D6BRE6_JATCU	1E-83	Profilin {ECO:0000256\|RuleBase:RU003909}
TAIR10	AT5G56600.1	1E-58	profilin 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69711001	69714214	+
GWHAAZE00000007	mRNA	69711001	69714214	+
GWHAAZE00000007	exon	69711001	69711123	+
GWHAAZE00000007	exon	69712693	69712830	+
GWHAAZE00000007	exon	69713688	69713843	+
GWHAAZE00000007	exon	69713954	69714214	+
GWHAAZE00000007	CDS	69711001	69711123	+
GWHAAZE00000007	CDS	69712693	69712830	+
GWHAAZE00000007	CDS	69713688	69713822	+
GWHAAZE00000007	three_prime_UTR	69713823	69713843	+
GWHAAZE00000007	three_prime_UTR	69713954	69714214	+

Transcript Sequence
>GWHTAAZE025924 ATGTCGTGGCAAACTTACGTAGATGAGCACTTGATGTGCGATATAGAAGGCAATCAACTCTCCTCTGCTGCTATCATCGGCCATGACGGCACCGTTTGGGCTCAAAGTGACTCTTTTCCTCAGTTTAAGCCAGAAGAAATAACGGCCATCATGACCGACTTTGAAGAACCTGGATCACTTGCACCAACTGGTTTATACCTTGGTGGCACCAAGTATATGGTGATTCAAGGTGAACCAGGTGCCGTCATTCGAGGAAAGAAGGGGCCCGGGGGTGTTACTATCAAGAAGACCAGCTTAGCTTTACTTATCGGGATATATGATGAGCCAATGACCCCAGGCCAGTGTAACATGGTTGTAGAAAGGCTGGGTGATTATCTCATTGATCAGGGTCTCTAGACTCTGATTTATAATAATGTGGGTGTAGTAGCATATTTACATGAGGGATTTGAGTGTGCTTTGCTATTTAAAAGATTGAAAAATGTTTTCCAGCTCTTGTATCAAACTTGTCACTGTAGCAATTCCCTCCTGTCTTTCGTTTATTTGGTTTTCCTGTTTGTTTGGGTAAGTAGTTATTGTCCTTTAAGGACTGATTTCGATCTGGGTTGGGATGTAATCAACTGTGTCTAAGGACCTTTTTTGAATGGCAAGTGTTTTTAATACATTATAAAATTTGGCATA

Network for GWHGAAZE025890

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00235.20	Profilin	1	130	1.20E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05759	PFN	Rap1 signaling pathway	map04015
		MAPK signaling pathway - fly	map04013
		Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name
GO:0003779	molecular_function	actin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	249.203
	SRR3591706	second leaf	74.281
	SRR3591707	mature leaf	109.621
	SRR3591708	Shoot apex	128.832
	SRR3591709	Stem	329.385
	SRR3591710	White floral bud	161.477
	SRR3591711	White flower	329.963
	SRR3591712	Green floral bud	113.321
	SRR3591713	Yellow flower	296.820
SRP173429	SRR8316895	Juvenile bud stage	84.775
	SRR8316896	Juvenile bud stage	97.642
	SRR8316897	Juvenile bud stage	70.988
	SRR8316894	Third green stage	38.937
	SRR8316900	Third green stage	135.139
	SRR8316901	Third green stage	115.696
	SRR8316898	Complete white stage	56.735
	SRR8316899	Complete white stage	141.355
	SRR8316903	Complete white stage	99.668
	SRR8316902	Silver flowering stage	118.607
	SRR8316904	Silver flowering stage	115.558
	SRR8316905	Silver flowering stage	65.700
	SRR8316906	Gold flowering stage	225.413
	SRR8316907	Gold flowering stage	208.047
	SRR8316908	Gold flowering stage	222.941
SRP132670	SRR6706286	Control	181.603
	SRR6706287	Light intensity 50%	176.386
	SRR6706288	Light intensity 20%	173.112
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	138.294
	CNS0095593	Slightly white alabastrum(diploid) 2	189.755
	CNS0095594	Slightly white alabastrum(diploid) 3	156.289
	CNS0095595	Whole white alabastrum(diploid) 2	171.118
	CNS0095596	Whole white alabastrum(diploid) 3	95.796
	CNS0095597	Whole white alabastrum(diploid) 4	139.174
	CNS0095598	Silvery flower (diploied) 1	189.369
	CNS0095599	Silvery flower (diploied) 2	225.636
	CNS0095600	Silvery flower (diploied) 3	192.477
	CNS0095601	Golden flower (diploid) 1	236.183
	CNS0095602	Golden flower (diploid) 2	210.912
	CNS0095603	Golden flower (diploid) 3	199.346
	CNS0095604	Slightly white alabastrum(tetraploid) 1	112.471
	CNS0095605	Slightly white alabastrum(tetraploid) 2	106.844
	CNS0095606	Slightly white alabastrum(tetraploid) 3	161.989
	CNS0095607	Whole white alabastrum(tetraploid) 1	103.683
	CNS0095608	Whole white alabastrum(tetraploid) 2	86.221
	CNS0095609	Whole white alabastrum(tetraploid) 3	102.921
	CNS0095610	Silvery flower (tetraploid) 1	198.060
	CNS0095611	Silvery flower (tetraploid) 2	143.842
	CNS0095612	Silvery flower (tetraploid) 3	127.970
	CNS0095613	Golden flower (tetraploid) 1	163.493
	CNS0095614	Golden flower (tetraploid) 2	169.242
	CNS0095615	Golden flower (tetraploid) 3	167.054
CRA001975	CRR073297	Stem 1	111.701
	CRR073298	Stem 2	119.069
	CRR073299	Stem 3	126.292
	CRR073300	Leaf 1	118.949
	CRR073301	Leaf 2	143.216
	CRR073302	Leaf 3	182.744
	CRR073303	Juvenile bud 1	162.794
	CRR073304	Juvenile bud 2	129.659
	CRR073305	Juvenile bud 3	120.913
	CRR073306	Third green 1	127.469
	CRR073307	Third green 2	174.092
	CRR073308	Third green 3	123.665
	CRR073309	Second white 1	81.234
	CRR073310	Second white 2	116.886
	CRR073311	Second white 3	72.678
	CRR073312	Silver flowering 1	90.472
	CRR073313	Silver flowering 2	90.064
	CRR073314	Silver flowering 3	101.361
	CRR073315	Gold flowering 1	174.267
	CRR073316	Gold flowering 2	199.211
	CRR073317	Gold flowering 3	140.499
	CRR073318	Tawny withering 1	521.660
	CRR073319	Tawny withering 2	540.106
	CRR073320	Tawny withering 3	513.616