Gene detail

Detail information of GWHGAAZE025874

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002516199.1	4.3135E-162	fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
Swissprot	tr\|Q0WUR5\|FAB1A_ARATH	1E-102	1-phosphatidylinositol-3-phosphate 5-kinase FAB1A
trEMBL	tr\|B9RR30\|B9RR30_RICCO	2E-162	Fyve finger-containing phosphoinositide kinase, fyv1, putative {ECO:0000313\|EMBL:EEF46201.1}
TAIR10	AT4G33240.2	3E-84	1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69339074	69347877	+
GWHAAZE00000007	mRNA	69339074	69347877	+
GWHAAZE00000007	exon	69339074	69339696	+
GWHAAZE00000007	exon	69347145	69347428	+
GWHAAZE00000007	exon	69347558	69347877	+
GWHAAZE00000007	CDS	69339074	69339696	+
GWHAAZE00000007	CDS	69347145	69347428	+
GWHAAZE00000007	CDS	69347558	69347877	+

Transcript Sequence
>GWHTAAZE025908 ATGGCCACGCCTGACAATAATAATAAGCTGTCTGAGATAGTTGACATGGTCAAATCATGGATCCCTCGAAGGACCGAACCTGCAAACTTGTCCAAGGACTTTTGGATGCCTGATCGAAGCTGCAGGGTTTGCTACGAATGTGATTCACAGTTCACCATATTTAACCGCAAGCACCATTGCCGCCTGTGTGGACGAGTTTTCTGTGCAAAGTGTACTGAAAACTCAATTCCTGTTGCTTCTGATGAGTCCAAAGTTAGCCGTGAAGATAGGGAGAGGATCAGGGTATGTAATTATTGCTTCAAGCAATGGGAGCAGGGGATAACCACAGTTGATAACGCAATGAGTACTTCAAGCCCTGGCCTGAGCCCATCTCCATCAGCAACCAGTTTGGTCAGTACCCAATCTACTTGCACATTTAACAGCAGCACTAGCAGCACTGGTTCAACTATGTACTCCACTGGGCCGTACAAGTATGTGCAATGTAGCACTAGTCAAAGCCCTCATCAGTGTGCTCAGATGGATCCAGTTGCAGTTAAGCAAGACCAAGCAATATGTCCAGTCGAATCAGATTCCACTGACACTGGGCATCTGTTTCCTAACCAATTTGGGTACTGCACGAACAGGAGTGATGACGAGGAAGATGAGCATGGTGTTTATAGATCACATTCTGCGATTGCAAAGGCCGGTGTCTATTGTGGTGTTGCTGATTATAATGAGATTAATCATACTTATGGACCTCATGAACTGTGTCCTGATGATGAGAACATTGCCACAAATTCTGTGAATTCACATCTATTACCTGACAACTTCAGCACACAGGGTTTAGAAGGAATTAGAAAGCTTGGGGAAGAGTTGAATGATAGGAATGCTGGTAATGAGTGTGAACCTCCTGTATATGATGTGGATGGAGAGTGGGGTTACCTACGCTCTTCAAGCAGCTTTGGCTGTGAGGAATACAGTAACAGGGATAGGTCAAATGAGGTTCACAGGAAGGCCATGAAGAATGTGGTTGATGGGCATTTTAGAGCTTTGATTCTTCAGCTTTTGCAGGTTGAGAACCTACCCGTGGGTGAGGATAACAAAGAGCATTGGCTGGACATAATTACATCATTATCCTGGGAAGCTGCCACACTTCTTAAACCAGATACGAGCAAGGGTGGAGGAATGGATCCCGGTGGATATGTTAAGGTTAAATGCATAGCTTGTGGGCATCGCAGTGAAAGGTAA

Network for GWHGAAZE025874

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01363.22	FYVE	35	103	2.90E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00921	PIKFYVE, FAB1	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070
		Phagosome	map04145
		Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.807
	SRR3591706	second leaf	10.562
	SRR3591707	mature leaf	23.770
	SRR3591708	Shoot apex	6.429
	SRR3591709	Stem	8.292
	SRR3591710	White floral bud	8.615
	SRR3591711	White flower	10.490
	SRR3591712	Green floral bud	6.888
	SRR3591713	Yellow flower	6.574
SRP173429	SRR8316895	Juvenile bud stage	6.721
	SRR8316896	Juvenile bud stage	6.275
	SRR8316897	Juvenile bud stage	2.711
	SRR8316894	Third green stage	3.461
	SRR8316900	Third green stage	5.409
	SRR8316901	Third green stage	3.405
	SRR8316898	Complete white stage	1.843
	SRR8316899	Complete white stage	6.282
	SRR8316903	Complete white stage	5.248
	SRR8316902	Silver flowering stage	1.667
	SRR8316904	Silver flowering stage	4.912
	SRR8316905	Silver flowering stage	1.596
	SRR8316906	Gold flowering stage	5.510
	SRR8316907	Gold flowering stage	3.037
	SRR8316908	Gold flowering stage	6.390
SRP132670	SRR6706286	Control	8.650
	SRR6706287	Light intensity 50%	9.209
	SRR6706288	Light intensity 20%	9.712
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.170
	CNS0095593	Slightly white alabastrum(diploid) 2	0.851
	CNS0095594	Slightly white alabastrum(diploid) 3	1.783
	CNS0095595	Whole white alabastrum(diploid) 2	1.317
	CNS0095596	Whole white alabastrum(diploid) 3	0.532
	CNS0095597	Whole white alabastrum(diploid) 4	1.577
	CNS0095598	Silvery flower (diploied) 1	6.264
	CNS0095599	Silvery flower (diploied) 2	3.580
	CNS0095600	Silvery flower (diploied) 3	12.595
	CNS0095601	Golden flower (diploid) 1	4.127
	CNS0095602	Golden flower (diploid) 2	14.958
	CNS0095603	Golden flower (diploid) 3	13.380
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.100
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.890
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.816
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.381
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.148
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.959
	CNS0095610	Silvery flower (tetraploid) 1	9.303
	CNS0095611	Silvery flower (tetraploid) 2	12.677
	CNS0095612	Silvery flower (tetraploid) 3	5.148
	CNS0095613	Golden flower (tetraploid) 1	2.523
	CNS0095614	Golden flower (tetraploid) 2	7.246
	CNS0095615	Golden flower (tetraploid) 3	12.700
CRA001975	CRR073297	Stem 1	8.799
	CRR073298	Stem 2	8.795
	CRR073299	Stem 3	6.664
	CRR073300	Leaf 1	6.861
	CRR073301	Leaf 2	4.801
	CRR073302	Leaf 3	6.101
	CRR073303	Juvenile bud 1	3.340
	CRR073304	Juvenile bud 2	3.149
	CRR073305	Juvenile bud 3	8.267
	CRR073306	Third green 1	0.887
	CRR073307	Third green 2	0.790
	CRR073308	Third green 3	1.015
	CRR073309	Second white 1	0.875
	CRR073310	Second white 2	2.624
	CRR073311	Second white 3	1.717
	CRR073312	Silver flowering 1	1.084
	CRR073313	Silver flowering 2	0.760
	CRR073314	Silver flowering 3	0.595
	CRR073315	Gold flowering 1	3.734
	CRR073316	Gold flowering 2	11.969
	CRR073317	Gold flowering 3	7.316
	CRR073318	Tawny withering 1	1.902
	CRR073319	Tawny withering 2	2.800
	CRR073320	Tawny withering 3	1.766