Gene detail

Detail information of GWHGAAZE025853

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277157.1	2.01834E-63	PREDICTED: protein TIFY 10A [Vitis vinifera]
Swissprot	tr\|Q9LMA8\|TI10A_ARATH	1E-37	Protein TIFY 10A
trEMBL	tr\|F6HGN3\|F6HGN3_VITVI	8E-64	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51381.1}
TAIR10	AT1G19180.1	5E-32	jasmonate-zim-domain protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68912946	68915038	+
GWHAAZE00000007	mRNA	68912946	68915038	+
GWHAAZE00000007	exon	68912946	68913132	+
GWHAAZE00000007	exon	68913771	68914112	+
GWHAAZE00000007	exon	68914222	68914279	+
GWHAAZE00000007	exon	68914939	68915038	+
GWHAAZE00000007	CDS	68912946	68913132	+
GWHAAZE00000007	CDS	68913771	68914112	+
GWHAAZE00000007	CDS	68914222	68914279	+
GWHAAZE00000007	CDS	68914939	68915038	+

Transcript Sequence
>GWHTAAZE025887 ATGTCGAGTTCATCGGAGATTGTAGATTCCGGCAGGATTTCCGGCTCTAAAATGCCGGAGAGGTCGAATTTCTCGCAGACATGTAGTCTTTTGAGTCAATACATTAAAGAAAATGGAACACTCGGAGATCTCACCCTCGGTATTAACAACGGTACTCTTCCTCAATTCCTACGCTTAATTAAGTACTGCATGCCGGAAACCTACCGGCAAAATGCGCCGGCGACCACCATGAACTTTTTTCCGGTGGTTGAGAAACAGAGATCCATATCTAGAACCCCAAGCCTTGTGAATTTTGGTTCCCCTATTGAGGTGGCAAAAAAATTGAAGAATGAAACTTCTCAAATGACTATTTTTTATGGCGGACAAGTGATTGTGTTGAATGATATGAGTGTTGACAAGGCAAAGGAAGTGATGCTATTTGCTAGCAATTCAACCTCACGGGCTCCTAAAACTTTTAGTTATTCTGCTAATTTGATTCATAAACCTACTGCTGAATTTGCTCAACGCCCAACTCAGCCTATTGTTGCTGATCTACCTATTGCGAGGAAAGCTTCCCTCACTCGCTTCTTGGAGAAGAGAAAGGATAGGATCGTAGCAAGGGCTCCATATCAGATCAGCGCAGCTTCCAAGCCAGAAGAAAGCAAGGCATGGCTAGGACTGGCTGCTCTTTCTCCTCTACAATCGTAG

Network for GWHGAAZE025853

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06200.15	tify	111	142	4.60E-14
PF09425.11	Jas_motif	179	204	2.60E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Tify

KEGG pathway

KO	Enzyme	pathway	mapID
K13464	JAZ	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	199.842
	SRR3591706	second leaf	149.475
	SRR3591707	mature leaf	220.596
	SRR3591708	Shoot apex	106.556
	SRR3591709	Stem	163.824
	SRR3591710	White floral bud	324.728
	SRR3591711	White flower	320.341
	SRR3591712	Green floral bud	258.879
	SRR3591713	Yellow flower	363.125
SRP173429	SRR8316895	Juvenile bud stage	430.561
	SRR8316896	Juvenile bud stage	487.489
	SRR8316897	Juvenile bud stage	335.695
	SRR8316894	Third green stage	65.885
	SRR8316900	Third green stage	124.222
	SRR8316901	Third green stage	364.114
	SRR8316898	Complete white stage	76.745
	SRR8316899	Complete white stage	691.211
	SRR8316903	Complete white stage	116.058
	SRR8316902	Silver flowering stage	69.026
	SRR8316904	Silver flowering stage	63.241
	SRR8316905	Silver flowering stage	34.421
	SRR8316906	Gold flowering stage	168.372
	SRR8316907	Gold flowering stage	140.424
	SRR8316908	Gold flowering stage	186.710
SRP132670	SRR6706286	Control	119.716
	SRR6706287	Light intensity 50%	105.428
	SRR6706288	Light intensity 20%	96.245
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	435.929
	CNS0095593	Slightly white alabastrum(diploid) 2	473.204
	CNS0095594	Slightly white alabastrum(diploid) 3	549.460
	CNS0095595	Whole white alabastrum(diploid) 2	382.169
	CNS0095596	Whole white alabastrum(diploid) 3	165.614
	CNS0095597	Whole white alabastrum(diploid) 4	299.261
	CNS0095598	Silvery flower (diploied) 1	620.232
	CNS0095599	Silvery flower (diploied) 2	657.800
	CNS0095600	Silvery flower (diploied) 3	316.567
	CNS0095601	Golden flower (diploid) 1	732.166
	CNS0095602	Golden flower (diploid) 2	593.995
	CNS0095603	Golden flower (diploid) 3	566.678
	CNS0095604	Slightly white alabastrum(tetraploid) 1	296.780
	CNS0095605	Slightly white alabastrum(tetraploid) 2	324.482
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.272
	CNS0095607	Whole white alabastrum(tetraploid) 1	233.489
	CNS0095608	Whole white alabastrum(tetraploid) 2	130.175
	CNS0095609	Whole white alabastrum(tetraploid) 3	116.934
	CNS0095610	Silvery flower (tetraploid) 1	106.148
	CNS0095611	Silvery flower (tetraploid) 2	63.936
	CNS0095612	Silvery flower (tetraploid) 3	65.593
	CNS0095613	Golden flower (tetraploid) 1	77.949
	CNS0095614	Golden flower (tetraploid) 2	84.105
	CNS0095615	Golden flower (tetraploid) 3	55.454
CRA001975	CRR073297	Stem 1	188.916
	CRR073298	Stem 2	153.363
	CRR073299	Stem 3	143.428
	CRR073300	Leaf 1	117.673
	CRR073301	Leaf 2	144.942
	CRR073302	Leaf 3	124.186
	CRR073303	Juvenile bud 1	78.358
	CRR073304	Juvenile bud 2	279.700
	CRR073305	Juvenile bud 3	80.888
	CRR073306	Third green 1	38.188
	CRR073307	Third green 2	52.533
	CRR073308	Third green 3	50.198
	CRR073309	Second white 1	54.616
	CRR073310	Second white 2	62.173
	CRR073311	Second white 3	54.041
	CRR073312	Silver flowering 1	158.396
	CRR073313	Silver flowering 2	134.637
	CRR073314	Silver flowering 3	124.872
	CRR073315	Gold flowering 1	87.133
	CRR073316	Gold flowering 2	242.219
	CRR073317	Gold flowering 3	164.429
	CRR073318	Tawny withering 1	188.007
	CRR073319	Tawny withering 2	740.688
	CRR073320	Tawny withering 3	145.517