Gene detail

Detail information of GWHGAAZE025830

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007012667.1	1.4397E-120	Growth-regulating factor 5 isoform 1 [Theobroma cacao]
Swissprot	tr\|Q8L8A6\|GRF5_ARATH	3E-57	Growth-regulating factor 5
trEMBL	tr\|A0A061GL83\|A0A061GL83_THECC	5E-121	Growth-regulating factor 5 isoform 1 {ECO:0000313\|EMBL:EOY30286.1}
TAIR10	AT3G13960.1	5E-50	growth-regulating factor 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68582700	68585300	-
GWHAAZE00000007	mRNA	68582700	68585300	-
GWHAAZE00000007	exon	68582700	68583168	-
GWHAAZE00000007	exon	68583864	68584458	-
GWHAAZE00000007	exon	68584880	68585300	-
GWHAAZE00000007	CDS	68584880	68585300	-
GWHAAZE00000007	CDS	68583864	68584458	-
GWHAAZE00000007	CDS	68582700	68583168	-

Transcript Sequence
>GWHTAAZE025864 ATGGCAGCAGAGTACACCGTGATCAGAACCATTAATTTTTATACATGTACAGAAGATCCTGCAACCCAAATGGTCCCTGAATTAAATATACCTGCTAACTTTAATTTCATCAATATCCTCTCTCTCTCTATAAACAACTATCTATCTGTGTCCCTCCCTCTGTTCTCATCACTCTCTAAATTTTGTGACAATCTTTCTAGTTTTGTTTCTGTGGTTGAAATGATGAGTACGAATATGAGTAGTAGTGGAAGATCAAATAGGTTCCCTTTCACTACATCTCAATGGCAAGAACTTGAACACCAAGCTCTTATTTTCAAATATATGGTTTCTGGTATACCAATTCCACCTGATCTCCTCTTCTCCATCAAAACCAGCTTTGATTCATCTCTTCCCTCCAAGCACATCCTTCAACCTCAACATGTGGGATGGAACTGTTTTCAGATGGGTTTTGGGAGGAAAATAGACCCAGAGCCAGGGAGGTGCAGAAGAACGGATGGTAAAAAATGGAGGTGCTCAAAAGAAGCCTACCCTGATTCCAAGTACTGTGAGAGACATATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAACTAGTCAATAATATTAACAACACAACAACAACATCATCAACAAATTTAGACTCAAAAATACCACAACAAACATCTAACATCTCATCAATCACTAGAAATTACACAAACCCACCTTCAAATTTTCCTCCCCAATCCAACCACCCCACTTGTTCTACCACTACTGCTACCCACTTTCTCTCTCCTCTCTCCTCAATACCCTCTGAATCTGAATCTGCTTCACACCATATTAACAACCACCCTTGTTTTAGTAATCATCATCAGCATAATAGTAGTGGTGGTACTACGACTCTTCACCCCCCATTTCTTTATCCTCACTCATCTTCTTCCTCAAGGCCTCCTGGGATTGGTCTGTCTTCTCAAGATAACAACACCCACTTTCTCTTGAACTCTTCTCCTTATTCCCATTCAGACAAGGATTTCAGAAACAGATATGGACAAGGGATGAAAGAGGAGGGAGATAGGCATGCCTTTTATCAAGAAACTTGTGGGACAATGAGGAGCATGTCTGGTTCTTCAGTGGGTGATTCTTGGCACCTGGAGCCACTGACAATGGGGTCATCTTCCTCAATAATGGCCCACCAAAAACAGAGGAATTCCTCTGCTTTACGAAGTCCCTATTCTTCTTCATCATCATCTTCTTATTTGCAGCTAAGTGACACCCCAAAACAAGATCATCATCATCAGCAATACTATATGATGGGGAGCAACAGAGGTAGCGATTTGAAGTGTGAAATGGCTTTCAAAAGTGAAAGGGTTTGTGGTGATGATGAACCACAGAAAGTAATGCACCATTTCTTTGATGAATGGCCACCAACGAACAAAGATTCCACTACCCAACTCTCCATCTCCATTCCCACAACAACTTCGCATGATTTCTTCATGTCACATAAT

Network for GWHGAAZE025830

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08880.12	QLQ	89	122	6.10E-15
PF08879.11	WRC	156	198	3.00E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.775
	SRR3591706	second leaf	0.614
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	20.260
	SRR3591709	Stem	5.006
	SRR3591710	White floral bud	3.963
	SRR3591711	White flower	2.938
	SRR3591712	Green floral bud	4.227
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	3.875
	SRR8316896	Juvenile bud stage	1.972
	SRR8316897	Juvenile bud stage	2.063
	SRR8316894	Third green stage	1.659
	SRR8316900	Third green stage	1.193
	SRR8316901	Third green stage	1.077
	SRR8316898	Complete white stage	0.253
	SRR8316899	Complete white stage	1.399
	SRR8316903	Complete white stage	0.936
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.543
	SRR6706287	Light intensity 50%	0.736
	SRR6706288	Light intensity 20%	1.028
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.324
	CNS0095593	Slightly white alabastrum(diploid) 2	3.539
	CNS0095594	Slightly white alabastrum(diploid) 3	2.436
	CNS0095595	Whole white alabastrum(diploid) 2	1.700
	CNS0095596	Whole white alabastrum(diploid) 3	1.065
	CNS0095597	Whole white alabastrum(diploid) 4	0.528
	CNS0095598	Silvery flower (diploied) 1	9.611
	CNS0095599	Silvery flower (diploied) 2	4.580
	CNS0095600	Silvery flower (diploied) 3	0.931
	CNS0095601	Golden flower (diploid) 1	6.031
	CNS0095602	Golden flower (diploid) 2	2.526
	CNS0095603	Golden flower (diploid) 3	2.753
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.642
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.443
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.348
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.173
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.042
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.057
	CNS0095610	Silvery flower (tetraploid) 1	0.083
	CNS0095611	Silvery flower (tetraploid) 2	1.090
	CNS0095612	Silvery flower (tetraploid) 3	0.392
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.081
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	8.364
	CRR073298	Stem 2	8.950
	CRR073299	Stem 3	4.856
	CRR073300	Leaf 1	2.935
	CRR073301	Leaf 2	2.564
	CRR073302	Leaf 3	1.432
	CRR073303	Juvenile bud 1	0.623
	CRR073304	Juvenile bud 2	0.131
	CRR073305	Juvenile bud 3	0.517
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.006
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000