Gene detail

Detail information of GWHGAAZE025826

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656128.1	9.50529E-86	PREDICTED: uncharacterized protein LOC100256088 [Vitis vinifera]
trEMBL	tr\|F6HGP2\|F6HGP2_VITVI	2E-85	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51407.1}
TAIR10	AT5G09380.1	5E-42	RNA polymerase III RPC4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68521857	68523757	-
GWHAAZE00000007	mRNA	68521857	68523757	-
GWHAAZE00000007	exon	68523683	68523757	-
GWHAAZE00000007	exon	68523371	68523431	-
GWHAAZE00000007	exon	68523007	68523098	-
GWHAAZE00000007	exon	68522687	68522923	-
GWHAAZE00000007	exon	68521857	68522006	-
GWHAAZE00000007	CDS	68523683	68523757	-
GWHAAZE00000007	CDS	68523371	68523431	-
GWHAAZE00000007	CDS	68523007	68523098	-
GWHAAZE00000007	CDS	68522687	68522923	-
GWHAAZE00000007	CDS	68521857	68522006	-

Transcript Sequence
>GWHTAAZE025860 ATGCTTTCACTTACCCCTGTTTTTGCAGGTGGGGGTGCCTCTTTTAAAGACATGAACGAATACAAGGAACCATGGAATTACTACAGTTATTATCCTGTAACTCTTCCTTTGAGGAGGCCGTATTCAGGAAATCCAGAACTTCTTGATGAAGAGGAATTTTGCGAGGCTTCAGAAACCACAACTTACACTGAAAACTCCACAAATGCCGCAGAGGAGCTTGGTCTAACGGAAGATAATTTGGAGGCATGCATGTTCTTCCTTAAGTTACCAGAAACTATGCCTTTATTAAAGCAACTGATTAAGACCGAAGACCAAGAGGTTGCTGGCAGCTCGAAACCATTAAAGGGTGCAGGATCTTCAACCAAGACCTGTAGTTTGAATGAGCTACCACCAGGTTACATGGGTAAAATGTTAGTCTACAGGACTGGTGCTGTCAAACTGAAGCCAGGTGATACCCTTTACAATGTTTCTCCTGGCTTGGACTCTGTGTTTGCACAAGATGCTGTTGCCATCAATAAGGAAGAGAAGCATTGTTGCGTTTTGGGGGAACTCAACAAGCGTGCCACTATGATCCCAGATGTGGACTATGCGTTTGCAAATATGCCTGAATTATGA

Network for GWHGAAZE025826

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05132.15	RNA_pol_Rpc4	111	194	1.40E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03026	RPC4, POLR3D	RNA polymerase	map03020
K03026	RPC4, POLR3D	Cytosolic DNA-sensing pathway	map04623

Gene Ontology

GO term	Ontology	Name
GO:0006383	biological_process	transcription by RNA polymerase III
GO:0005666	cellular_component	RNA polymerase III complex
GO:0003677	molecular_function	DNA binding
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.660
	SRR3591706	second leaf	0.138
	SRR3591707	mature leaf	0.907
	SRR3591708	Shoot apex	3.382
	SRR3591709	Stem	1.516
	SRR3591710	White floral bud	2.877
	SRR3591711	White flower	2.590
	SRR3591712	Green floral bud	2.312
	SRR3591713	Yellow flower	1.660
SRP173429	SRR8316895	Juvenile bud stage	0.904
	SRR8316896	Juvenile bud stage	1.188
	SRR8316897	Juvenile bud stage	0.122
	SRR8316894	Third green stage	0.300
	SRR8316900	Third green stage	0.630
	SRR8316901	Third green stage	0.451
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.494
	SRR8316903	Complete white stage	0.287
	SRR8316902	Silver flowering stage	0.007
	SRR8316904	Silver flowering stage	0.273
	SRR8316905	Silver flowering stage	0.095
	SRR8316906	Gold flowering stage	0.158
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.165
	SRR6706287	Light intensity 50%	0.234
	SRR6706288	Light intensity 20%	0.265
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.110
	CNS0095593	Slightly white alabastrum(diploid) 2	0.692
	CNS0095594	Slightly white alabastrum(diploid) 3	1.264
	CNS0095595	Whole white alabastrum(diploid) 2	1.376
	CNS0095596	Whole white alabastrum(diploid) 3	2.040
	CNS0095597	Whole white alabastrum(diploid) 4	0.416
	CNS0095598	Silvery flower (diploied) 1	0.704
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.527
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.105
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.545
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.684
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.157
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.512
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.115
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.311
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.930
	CRR073298	Stem 2	0.458
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.227
	CRR073301	Leaf 2	0.742
	CRR073302	Leaf 3	0.094
	CRR073303	Juvenile bud 1	0.137
	CRR073304	Juvenile bud 2	0.172
	CRR073305	Juvenile bud 3	0.075
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000