Gene detail

Detail information of GWHGAAZE025825

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004287619.1	0	PREDICTED: secologanin synthase-like [Fragaria vesca subsp. vesca]
COG	YP_001865045.1	2E-58	cytochrome P450
Swissprot	tr\|H2DH21\|C7A29_PANGI	0	Cytochrome P450 CYP72A219
trEMBL	tr\|A0A061GL91\|A0A061GL91_THECC	0	Cytochrome P450, putative {ECO:0000313\|EMBL:EOY30296.1}
TAIR10	AT3G14680.1	5E-142	cytochrome P450, family 72, subfamily A, polypeptide 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68516721	68520922	+
GWHAAZE00000007	mRNA	68516721	68520922	+
GWHAAZE00000007	exon	68516721	68517006	+
GWHAAZE00000007	exon	68517739	68517959	+
GWHAAZE00000007	exon	68518924	68519168	+
GWHAAZE00000007	exon	68519745	68520138	+
GWHAAZE00000007	exon	68520497	68520922	+
GWHAAZE00000007	CDS	68516721	68517006	+
GWHAAZE00000007	CDS	68517739	68517959	+
GWHAAZE00000007	CDS	68518924	68519168	+
GWHAAZE00000007	CDS	68519745	68520138	+
GWHAAZE00000007	CDS	68520497	68520922	+

Transcript Sequence
>GWHTAAZE025859 ATGGAGAGTTCTTTAAAGTACCTTTCTCATATAATAATCATCTCTTCTTTGTTTCTGCTCCTCTGTTGTGCTGTAAAAGTTGCTTACTCAATCTGGTGGAAACCAAAAAAGCTGGAAAAGAAGTTAAATCAGCAAGGATTCAGAGGAACTCCCTACAAACTGTTTGTTGGGGACATTAAAGAGATTGTGAAGCAAATAACCGAAGCGTGGTCCAAGCCTATCAATCTCACCCACCAGATTGTGACACGTGTTGATCCATTCACGCATAATATTGTCCAAAAATACGGGAAAATGGGTTTCTGTTGGTTAGGGACAACACCAAGGATGATCATAACGGACCCAGAGTTGGTCAAAGAGGTGCTCTCTAACAAGCTGGGTCACTTTCAAAAGCCACCACTAAACCCTCTTATACTCATCCTAACAAAAGGACTCACAACACTACAAGGCGAAAAATGGGCTACTCACAGGAGGATAATCAATCCTGCTTTCCACCTCGACAAATTGAAGGGTATGATACCGGTATTTGCAAACAGCTGCAACTCGTTAATACAGAAGTGGGAACAAGCAGTGGATTCTCAAGGAACTTGTGAAATAGATATTTGGCCCGAATTTCAAGACCTTGCCGGGGAAATAATTTCCAGAACAGCATTTGGAAGCAACTATGAAGAAGGAAAGAAGATCCTTAAACTACAAAAACAATTGCAAGTGTTAGTTATGGAAGCCATGCAAACCTTATACATTCCTGGTTTTAGATTCATACCGACAAAGAAGAATCAAAGGAGAAAAAGCTTGGACAAAAGGATTACCTCAATGCTCAGAACTTTGATACAAAGAAAAGAGAACTCAATGAGGTCCGGGGAATCCAACAGCAATGACTTGTTAGGCATCCTCTTGCAATCTAGTAACCAAAACAATTTACAAATTATGGGTGGCACAAATAGTAATAACCAAATGTCAATGGACGACATTATAGAGGAGTGCAAACTTTTTTACCTTGCCGGCCATGAGACAACATCAAGCTTATTAACTTGGACAATCATTGTCTTAGCTATGCACCCGGATTGGCAAGAGAAGGCTAGGGAAGAAGTTCTACAAGTATGCGGGAAAAAAGATCCAGATTTCCAATCTATAAACCACCTCAAAAACGTAACCATGATACTTTATGAAGTCCAAAGGCTATACTCACCCGTGATTGCTCTATACCTACATGCATACAAGGAAACCAAGATAGGGCATATCATTATACCAAAAGGGGTAGATATTGTACTACCTCAATTACTTATTCATCATGATCCCCAACTCTGGGGCACCGATGCAGAAGAATTTAAACCAGAAAGGTTCTCTGAAGGAGTTTCGAAGGCATCTAAAGACCAGCCAGCTTTTTTTCCATTTGGATGGGGACCACGTACTTGTATCGGTCAACATTTTGCAAACATAGAAGTTAAGATTGCACTGGCTATGATTTTACAACGTTTCTCTGTTGAGCTCTCGCCATCCTACACACATGCTCCTTCTACTGCTATGACTCTTCAACCACAACATGGAGCTCACATTAGATTAAACCAACTCTAA

Network for GWHGAAZE025825

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	87	505	1.40E-92

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506	molecular_function	iron ion binding
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.082
	SRR3591706	second leaf	0.263
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.125
	SRR3591709	Stem	0.131
	SRR3591710	White floral bud	0.362
	SRR3591711	White flower	1.720
	SRR3591712	Green floral bud	0.373
	SRR3591713	Yellow flower	2.332
SRP173429	SRR8316895	Juvenile bud stage	0.030
	SRR8316896	Juvenile bud stage	0.358
	SRR8316897	Juvenile bud stage	0.012
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.045
	SRR8316901	Third green stage	0.034
	SRR8316898	Complete white stage	0.055
	SRR8316899	Complete white stage	0.066
	SRR8316903	Complete white stage	0.249
	SRR8316902	Silver flowering stage	0.085
	SRR8316904	Silver flowering stage	0.088
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.815
	SRR8316907	Gold flowering stage	0.213
	SRR8316908	Gold flowering stage	1.770
SRP132670	SRR6706286	Control	0.016
	SRR6706287	Light intensity 50%	0.042
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.040
	CNS0095593	Slightly white alabastrum(diploid) 2	0.128
	CNS0095594	Slightly white alabastrum(diploid) 3	0.021
	CNS0095595	Whole white alabastrum(diploid) 2	0.076
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.170
	CNS0095598	Silvery flower (diploied) 1	0.215
	CNS0095599	Silvery flower (diploied) 2	0.611
	CNS0095600	Silvery flower (diploied) 3	0.391
	CNS0095601	Golden flower (diploid) 1	0.059
	CNS0095602	Golden flower (diploid) 2	0.271
	CNS0095603	Golden flower (diploid) 3	0.349
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.082
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.080
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.046
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.067
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.284
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.414
	CNS0095611	Silvery flower (tetraploid) 2	0.207
	CNS0095612	Silvery flower (tetraploid) 3	0.737
	CNS0095613	Golden flower (tetraploid) 1	3.305
	CNS0095614	Golden flower (tetraploid) 2	0.479
	CNS0095615	Golden flower (tetraploid) 3	0.060
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.003
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.046
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.025
	CRR073309	Second white 1	0.144
	CRR073310	Second white 2	0.277
	CRR073311	Second white 3	2.415
	CRR073312	Silver flowering 1	0.201
	CRR073313	Silver flowering 2	0.164
	CRR073314	Silver flowering 3	0.068
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.488
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.053