Gene detail

Detail information of GWHGAAZE025803

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011078039.1	1.1787E-173	PREDICTED: mitogen-activated protein kinase kinase 2 [Sesamum indicum]
COG	NP_471268.1	1E-25	hypothetical protein lin1934
Swissprot	tr\|Q9S7U9\|M2K2_ARATH	7E-148	Mitogen-activated protein kinase kinase 2
trEMBL	tr\|A0A067EWU4\|A0A067EWU4_CITSI	5E-173	Uncharacterized protein {ECO:0000313\|EMBL:KDO55416.1}
TAIR10	AT4G29810.1	2E-112	MAP kinase kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	68071270	68076848	-
GWHAAZE00000007	mRNA	68071270	68076848	-
GWHAAZE00000007	exon	68071270	68071336	-
GWHAAZE00000007	exon	68072811	68073037	-
GWHAAZE00000007	exon	68073131	68073313	-
GWHAAZE00000007	exon	68073676	68073945	-
GWHAAZE00000007	exon	68074047	68074181	-
GWHAAZE00000007	exon	68076102	68076223	-
GWHAAZE00000007	exon	68076343	68076848	-
GWHAAZE00000007	five_prime_UTR	68076343	68076848	-
GWHAAZE00000007	five_prime_UTR	68076168	68076223	-
GWHAAZE00000007	CDS	68076102	68076167	-
GWHAAZE00000007	CDS	68074047	68074181	-
GWHAAZE00000007	CDS	68073676	68073945	-
GWHAAZE00000007	CDS	68073131	68073313	-
GWHAAZE00000007	CDS	68072811	68073037	-
GWHAAZE00000007	CDS	68071270	68071336	-

Transcript Sequence
>GWHTAAZE025837 CCGTTCATATTAACACTTTGGTTAAATAAATATCTATATATAAGCATTGGAAAAAAAAGGAATGAATGGTATATATTAAAATGCACATCATTTGACCGAATTCGACTTATACTTGAAATAATAATATGTACTAATAAAGAAAAGAAAAGAAATTGAAATTCAAACCTTATGTTCTAAAATAATAAAATACATATGGTCTAATTCTGGTAATCTTCCTTGTCATTTCCATCGGATAACATGGTGATTTCCTCATCACTCACTGGTCGCTTCTTCAATCTTACTACCACTTACCTACAAACATTGAATTATTATTTCCTGTATCTATATCTATATACCTACTTTACTTCCCATTAAATTTAAAATTAAATATAATGTATTCATAGCAAAACCTAAGCATTTCCCCTTTCATATATATAATAAATAAATATAATCTCAACAAAAAAACAGAATTTGGGACACGAAACCAAATCACTCATGAAGAAAGGTAGTTTAGGCCCTAGCCTCAACTTTTGAGCTAACATTTCTCTCTCCTAAACTTTGTAGAACTCAATCGGGGACGTTTATGGATGGTGATCTGTTAGTCAACAGAGATGGAGTTCGAGTTGTCTCTCAGAGCGAAGTTGAAACTCCACCCCTTATACAGCCATCAGATAACCAGTTAAGCTTAGCTGATTTCGATGCAATTAAAGTCATTGGAAAGGGAAATGGTGGAATTGTGCGGCTGGTGCAACACAAATGGACAGGACAGTTTTTTGCTTTAAAGGAAAATTGGGGAGGATCAGTTTCTAATATATGGTCTAATGTACAGGTTATTCAAATGAACATTGAGGAATCTTATCGCAAGCAGATTGCACAGGAGTTGAAAATTAATCAGTCATCACATTGCCCATATGTTGTCGTATGTTACCAATCCTTTTATGATAACGGTGCCGTGTCTCTAATCTTGGAGTACATGGATGGGGGATCTCTTTGTGATTTTCTGAAGAAGGTCAAAAAAATCCCAGAACCATATCTTGTTGAAATCTGTAGACAGGTGCTCAAGGGTTTATGGTATCTTCATCACGAAAAACATATTATTCACAGGGACCTAAAACCCTCAAATTTGCTGATAAATCACAGAGGGGAAGTAAAGATAACTGACTTTGGTGTGAGTGCAATATTGGCGAACACCTCTGGACAAGCTAATACGTTCGTCGGAACATACAACTATATGTCTCCAGAGAGAATAGCTGGAGGTCAATCGTATGGCTATAAAAGTGACATTTGGAGCTTCGGGTTAGTGTTACTTGAGTGTGCAACAGGTGACTTCCCCTATACCCCACCACATCAACAGGAAGGATGGGTCAATGTTTATGAGCTAATGGAAACGATCGTTGACCAACCGCCGCCTCATGCACCATCCGATCATTTCACTCCAGAGTTTTGTTCATTTATTTCCGCGTGGGGGTGGTCGGTGGGTGGACGAGGAGTGGAGTTTGGTGGGTGCTGGGGGTCGGAGAAGGGAGTGTAG

Network for GWHGAAZE025803

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	40	271	3.90E-55

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE7

KEGG pathway

KO	Enzyme	pathway	mapID
K20603	MKK2	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.232
	SRR3591706	second leaf	25.761
	SRR3591707	mature leaf	29.011
	SRR3591708	Shoot apex	31.624
	SRR3591709	Stem	64.532
	SRR3591710	White floral bud	34.977
	SRR3591711	White flower	41.239
	SRR3591712	Green floral bud	21.161
	SRR3591713	Yellow flower	32.755
SRP173429	SRR8316895	Juvenile bud stage	19.575
	SRR8316896	Juvenile bud stage	25.428
	SRR8316897	Juvenile bud stage	19.419
	SRR8316894	Third green stage	8.079
	SRR8316900	Third green stage	23.384
	SRR8316901	Third green stage	20.929
	SRR8316898	Complete white stage	19.341
	SRR8316899	Complete white stage	42.469
	SRR8316903	Complete white stage	23.429
	SRR8316902	Silver flowering stage	17.842
	SRR8316904	Silver flowering stage	28.867
	SRR8316905	Silver flowering stage	15.050
	SRR8316906	Gold flowering stage	44.346
	SRR8316907	Gold flowering stage	39.912
	SRR8316908	Gold flowering stage	51.341
SRP132670	SRR6706286	Control	14.810
	SRR6706287	Light intensity 50%	20.615
	SRR6706288	Light intensity 20%	19.793
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.372
	CNS0095593	Slightly white alabastrum(diploid) 2	15.722
	CNS0095594	Slightly white alabastrum(diploid) 3	14.431
	CNS0095595	Whole white alabastrum(diploid) 2	12.793
	CNS0095596	Whole white alabastrum(diploid) 3	9.691
	CNS0095597	Whole white alabastrum(diploid) 4	10.055
	CNS0095598	Silvery flower (diploied) 1	26.566
	CNS0095599	Silvery flower (diploied) 2	23.977
	CNS0095600	Silvery flower (diploied) 3	47.821
	CNS0095601	Golden flower (diploid) 1	32.790
	CNS0095602	Golden flower (diploid) 2	46.073
	CNS0095603	Golden flower (diploid) 3	40.704
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.910
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.034
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.162
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.538
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.188
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.414
	CNS0095610	Silvery flower (tetraploid) 1	54.719
	CNS0095611	Silvery flower (tetraploid) 2	52.549
	CNS0095612	Silvery flower (tetraploid) 3	46.762
	CNS0095613	Golden flower (tetraploid) 1	24.870
	CNS0095614	Golden flower (tetraploid) 2	48.841
	CNS0095615	Golden flower (tetraploid) 3	33.950
CRA001975	CRR073297	Stem 1	15.218
	CRR073298	Stem 2	12.877
	CRR073299	Stem 3	13.390
	CRR073300	Leaf 1	14.458
	CRR073301	Leaf 2	11.943
	CRR073302	Leaf 3	12.050
	CRR073303	Juvenile bud 1	14.040
	CRR073304	Juvenile bud 2	12.909
	CRR073305	Juvenile bud 3	15.877
	CRR073306	Third green 1	17.711
	CRR073307	Third green 2	15.782
	CRR073308	Third green 3	18.268
	CRR073309	Second white 1	16.874
	CRR073310	Second white 2	18.493
	CRR073311	Second white 3	14.938
	CRR073312	Silver flowering 1	15.083
	CRR073313	Silver flowering 2	9.445
	CRR073314	Silver flowering 3	9.987
	CRR073315	Gold flowering 1	11.530
	CRR073316	Gold flowering 2	17.099
	CRR073317	Gold flowering 3	11.583
	CRR073318	Tawny withering 1	25.377
	CRR073319	Tawny withering 2	35.812
	CRR073320	Tawny withering 3	27.230