Detail information of GWHGAAZE025802


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010090094.12.8265E-167Protein phosphatase 2C 16 [Morus notabilis]
COGYP_003709340.12E-18serine/threonine PP2C protein phosphatase
Swissprottr|Q9LNP9|P2C07_ARATH2E-145Protein phosphatase 2C 7 (Precursor)
trEMBLtr|W9QK21|W9QK21_9ROSA1E-167Protein phosphatase 2C 16 {ECO:0000313|EMBL:EXB38891.1}
TAIR10AT1G72770.39E-120homology to ABI1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6806372168067498+
GWHAAZE00000007mRNA6806372168067498+
GWHAAZE00000007exon6806372168064416+
GWHAAZE00000007exon6806500968065347+
GWHAAZE00000007exon6806564868065753+
GWHAAZE00000007exon6806715568067498+
GWHAAZE00000007CDS6806372168064416+
GWHAAZE00000007CDS6806500968065347+
GWHAAZE00000007CDS6806564868065753+
GWHAAZE00000007CDS6806715568067474+
GWHAAZE00000007three_prime_UTR6806747568067498+
Transcript Sequence

Network for GWHGAAZE025802

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00481.22PP2C2004695.50E-66
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14497PP2C MAPK signaling pathway - plant map04016
Plant hormone signal transductionmap04075

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity
GO:0043169molecular_functioncation binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE025802.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3020406080100120140160180Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.259
SRR3591706second leaf48.226
SRR3591707mature leaf62.468
SRR3591708Shoot apex30.284
SRR3591709Stem46.146
SRR3591710White floral bud56.801
SRR3591711White flower124.530
SRR3591712Green floral bud35.782
SRR3591713Yellow flower102.056
SRP173429 SRR8316895Juvenile bud stage 22.777
SRR8316896Juvenile bud stage 21.722
SRR8316897Juvenile bud stage 11.666
SRR8316894Third green stage 9.694
SRR8316900Third green stage 23.965
SRR8316901Third green stage 27.344
SRR8316898Complete white stage 36.273
SRR8316899Complete white stage 68.772
SRR8316903Complete white stage 50.672
SRR8316902Silver flowering stage69.968
SRR8316904Silver flowering stage76.267
SRR8316905Silver flowering stage41.348
SRR8316906Gold flowering stage 106.510
SRR8316907Gold flowering stage 75.752
SRR8316908Gold flowering stage 110.402
SRP132670SRR6706286Control25.869
SRR6706287Light intensity 50%27.232
SRR6706288Light intensity 20%28.967
CNP0000432CNS0095592Slightly white alabastrum(diploid) 135.709
CNS0095593Slightly white alabastrum(diploid) 222.367
CNS0095594Slightly white alabastrum(diploid) 324.038
CNS0095595Whole white alabastrum(diploid) 222.225
CNS0095596Whole white alabastrum(diploid) 319.005
CNS0095597Whole white alabastrum(diploid) 423.100
CNS0095598Silvery flower (diploied) 158.305
CNS0095599Silvery flower (diploied) 255.635
CNS0095600Silvery flower (diploied) 3119.042
CNS0095601Golden flower (diploid) 158.463
CNS0095602Golden flower (diploid) 2100.370
CNS0095603Golden flower (diploid) 392.012
CNS0095604Slightly white alabastrum(tetraploid) 129.581
CNS0095605Slightly white alabastrum(tetraploid) 223.823
CNS0095606Slightly white alabastrum(tetraploid) 348.317
CNS0095607Whole white alabastrum(tetraploid) 122.529
CNS0095608Whole white alabastrum(tetraploid) 219.392
CNS0095609Whole white alabastrum(tetraploid) 329.590
CNS0095610Silvery flower (tetraploid) 1154.929
CNS0095611Silvery flower (tetraploid) 2139.891
CNS0095612Silvery flower (tetraploid) 347.807
CNS0095613Golden flower (tetraploid) 198.138
CNS0095614Golden flower (tetraploid) 2139.402
CNS0095615Golden flower (tetraploid) 3125.480
CRA001975CRR073297Stem 129.054
CRR073298Stem 226.902
CRR073299Stem 323.201
CRR073300Leaf 128.221
CRR073301Leaf 234.126
CRR073302Leaf 319.707
CRR073303Juvenile bud 122.568
CRR073304Juvenile bud 220.483
CRR073305Juvenile bud 318.647
CRR073306Third green 122.046
CRR073307Third green 217.854
CRR073308Third green 318.576
CRR073309Second white 111.488
CRR073310Second white 222.801
CRR073311Second white 313.475
CRR073312Silver flowering 123.179
CRR073313Silver flowering 226.927
CRR073314Silver flowering 353.505
CRR073315Gold flowering 118.064
CRR073316Gold flowering 225.063
CRR073317Gold flowering 310.239
CRR073318Tawny withering 125.404
CRR073319Tawny withering 227.150
CRR073320Tawny withering 326.446