Gene detail

Detail information of GWHGAAZE025790

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009597979.1	0	PREDICTED: casein kinase I isoform delta-like [Nicotiana tomentosiformis]
COG	YP_632759.1	6E-17	serine/threonine-protein kinase PKN1
Swissprot	tr\|P42158\|KC1D_ARATH	0	Casein kinase I isoform delta-like
trEMBL	tr\|A0A068U6A8\|A0A068U6A8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313\|EMBL:CDP03143.1}
TAIR10	AT1G72710.1	0	casein kinase 1-like protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67883112	67891463	+
GWHAAZE00000007	mRNA	67883112	67891463	+
GWHAAZE00000007	exon	67883112	67883187	+
GWHAAZE00000007	exon	67883279	67883319	+
GWHAAZE00000007	exon	67886814	67886883	+
GWHAAZE00000007	exon	67886992	67887140	+
GWHAAZE00000007	exon	67887211	67887306	+
GWHAAZE00000007	exon	67887400	67887470	+
GWHAAZE00000007	exon	67888430	67888493	+
GWHAAZE00000007	exon	67888613	67888683	+
GWHAAZE00000007	exon	67889160	67889244	+
GWHAAZE00000007	exon	67889336	67889462	+
GWHAAZE00000007	exon	67889550	67889632	+
GWHAAZE00000007	exon	67889749	67889812	+
GWHAAZE00000007	exon	67890498	67890646	+
GWHAAZE00000007	exon	67891161	67891463	+
GWHAAZE00000007	CDS	67883112	67883187	+
GWHAAZE00000007	CDS	67883279	67883319	+
GWHAAZE00000007	CDS	67886814	67886883	+
GWHAAZE00000007	CDS	67886992	67887140	+
GWHAAZE00000007	CDS	67887211	67887306	+
GWHAAZE00000007	CDS	67887400	67887470	+
GWHAAZE00000007	CDS	67888430	67888493	+
GWHAAZE00000007	CDS	67888613	67888683	+
GWHAAZE00000007	CDS	67889160	67889244	+
GWHAAZE00000007	CDS	67889336	67889462	+
GWHAAZE00000007	CDS	67889550	67889632	+
GWHAAZE00000007	CDS	67889749	67889812	+
GWHAAZE00000007	CDS	67890498	67890646	+
GWHAAZE00000007	CDS	67891161	67891463	+

Transcript Sequence
>GWHTAAZE025824 ATGGAGCCTCGTGTTGGCAACAAGTTTCGGCTCGGTAGGAAGATTGGCAGTGGATCATTTGGAGAGATCTATCTAGGTACTAATATTCAGACAACTGAAGAGGTCGCAATTAAGCTTGAAAATATCAAGACCAAGCATCCTCAGTTGCTTTATGAGTCAAAGTTATACAGGATTCTACAGGGAGGAACTGGAATTCCAAACGTGAGATGGTTTGGAGTGGAGGGAGACTATAATGTGCTAGTCATGGATTTGCTTGGACCCAGTCTTGAAGATCTATTTAATTTTTGCAGCAGGAAACTTTCGCTGAAGACGGTTCTTATGCTTGCAGATCAAATGATCAATCGTGTCGAATTTGTTCATACTAAATCATTTCTACATCGAGATATAAAGCCGGACAATTTTCTTATGGGCTTGGGACGGCGTGCAAACCAGGTCTATATAATTGACTTTGGCCTGGCTAAGAAATATAGAGACACTTCAACCCACCAACACATTCCTTATAGAGAGAATAAAAACTTGACTGGAACTGCGAGATATGCAAGCATGAACACTCACCTTGGAATTGGTTGCAAAGAACAAAGCAGGAGGGATGATTTGGAATCTCTTGGATATGTCCTTATGTACTTCCTCAGAGGAAGTCTTCCTTGGCAGGGATTGAAAGCAGGAACTAAGAAGCAGAAGTATGAGAAAATAAGTGAAAAGAAAGTTTCTACACCTATTGAGGCCTTGTGCAGGGGTTATCCATCAGAGTTTGCTTCATACTTCCATTATTGTCGTTCACTACGGTTTGATGATAAGCCAGATTATGCTTACCTCAAGAGAATATTCCGTGATCTCTTTATCCATGAAGGCTTCCAGTTTGACTATGTTTTTGACTGGACCATTTTGAAATATCAGCAATCACAAATTGCTGCCCCTCCTTCCCGGGCTCTTGGACCGGGTGCTGGAACAAGCTCTGGAATGCCCCCTGCTATTCCCAATGCTGACAGGCAGTCAGGGGAGGAAGAAGGGAGATTAGCAGCTGGTTTGTCTTCTGGAGATCCTTTGCGTAGGAGAAGTTCTGTACAAGCAGCTATAAATGCAGGAAGCCTATCTAAGCAGAAGAATCCAGTTCCAAATGATTCAACATTGGGCAAAGAAGCTATGTTATCAAGCTCCACTTTTATGGGCCGGTCAAGTGGATCATTGAGGCGACCTACTACCTCCGGTAGCCGTGATGCATTCACCACAGGGACTGAGTCAGACCCTACTCGCTCACGGACCCCCGAGGCAAGTTCTGGAACGGTGCACAAAATCTCAAGTGGGCAAAGAAACTCACCGCTGGTTGGATCCTCAGATCCAAGGCACACTTCATCTGGCCGTATTAATTCAAGCATGAAGAACTATGAATCCACACTGAAGGGAATCGAGTCTCTCCACTTTGACGGCGAAGATAGGGTTCACCATTGA

Network for GWHGAAZE025790

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	10	230	1.60E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1

KEGG pathway

KO	Enzyme	pathway	mapID
K02218	CSNK1, CKI	MAPK signaling pathway - yeast	map04011
K02218	CSNK1, CKI	Hippo signaling pathway - multiple species	map04392

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	125.759
	SRR3591706	second leaf	62.611
	SRR3591707	mature leaf	63.853
	SRR3591708	Shoot apex	95.702
	SRR3591709	Stem	109.527
	SRR3591710	White floral bud	85.862
	SRR3591711	White flower	107.285
	SRR3591712	Green floral bud	60.745
	SRR3591713	Yellow flower	108.339
SRP173429	SRR8316895	Juvenile bud stage	56.338
	SRR8316896	Juvenile bud stage	73.607
	SRR8316897	Juvenile bud stage	47.613
	SRR8316894	Third green stage	24.291
	SRR8316900	Third green stage	67.092
	SRR8316901	Third green stage	64.636
	SRR8316898	Complete white stage	41.428
	SRR8316899	Complete white stage	110.264
	SRR8316903	Complete white stage	60.840
	SRR8316902	Silver flowering stage	45.181
	SRR8316904	Silver flowering stage	72.192
	SRR8316905	Silver flowering stage	33.504
	SRR8316906	Gold flowering stage	117.509
	SRR8316907	Gold flowering stage	110.986
	SRR8316908	Gold flowering stage	127.992
SRP132670	SRR6706286	Control	60.388
	SRR6706287	Light intensity 50%	61.128
	SRR6706288	Light intensity 20%	58.887
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	57.022
	CNS0095593	Slightly white alabastrum(diploid) 2	67.336
	CNS0095594	Slightly white alabastrum(diploid) 3	59.970
	CNS0095595	Whole white alabastrum(diploid) 2	53.276
	CNS0095596	Whole white alabastrum(diploid) 3	34.565
	CNS0095597	Whole white alabastrum(diploid) 4	44.523
	CNS0095598	Silvery flower (diploied) 1	75.418
	CNS0095599	Silvery flower (diploied) 2	63.736
	CNS0095600	Silvery flower (diploied) 3	104.662
	CNS0095601	Golden flower (diploid) 1	80.012
	CNS0095602	Golden flower (diploid) 2	112.694
	CNS0095603	Golden flower (diploid) 3	104.320
	CNS0095604	Slightly white alabastrum(tetraploid) 1	63.100
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.453
	CNS0095606	Slightly white alabastrum(tetraploid) 3	112.084
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.145
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.369
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.454
	CNS0095610	Silvery flower (tetraploid) 1	132.538
	CNS0095611	Silvery flower (tetraploid) 2	134.021
	CNS0095612	Silvery flower (tetraploid) 3	133.047
	CNS0095613	Golden flower (tetraploid) 1	101.397
	CNS0095614	Golden flower (tetraploid) 2	127.857
	CNS0095615	Golden flower (tetraploid) 3	130.939
CRA001975	CRR073297	Stem 1	76.528
	CRR073298	Stem 2	62.964
	CRR073299	Stem 3	47.849
	CRR073300	Leaf 1	74.448
	CRR073301	Leaf 2	70.194
	CRR073302	Leaf 3	46.862
	CRR073303	Juvenile bud 1	43.760
	CRR073304	Juvenile bud 2	39.071
	CRR073305	Juvenile bud 3	54.905
	CRR073306	Third green 1	36.233
	CRR073307	Third green 2	34.245
	CRR073308	Third green 3	34.111
	CRR073309	Second white 1	59.813
	CRR073310	Second white 2	65.975
	CRR073311	Second white 3	60.161
	CRR073312	Silver flowering 1	62.388
	CRR073313	Silver flowering 2	57.598
	CRR073314	Silver flowering 3	55.223
	CRR073315	Gold flowering 1	32.341
	CRR073316	Gold flowering 2	51.335
	CRR073317	Gold flowering 3	29.993
	CRR073318	Tawny withering 1	84.651
	CRR073319	Tawny withering 2	90.427
	CRR073320	Tawny withering 3	74.288