Gene detail

Detail information of GWHGAAZE025785

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011094007.1	1.9427E-129	PREDICTED: putative transcription factor bHLH041 [Sesamum indicum]
Swissprot	tr\|Q9LTS4\|BH041_ARATH	4E-63	Putative transcription factor bHLH041
trEMBL	tr\|D7TB65\|D7TB65_VITVI	7E-124	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27900.3}
TAIR10	AT5G56960.1	5E-53	basic helix-loop-helix (bHLH) DNA-binding family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67773171	67775857	+
GWHAAZE00000007	mRNA	67773171	67775857	+
GWHAAZE00000007	exon	67773171	67773191	+
GWHAAZE00000007	exon	67773281	67773343	+
GWHAAZE00000007	exon	67773597	67774256	+
GWHAAZE00000007	exon	67774553	67774933	+
GWHAAZE00000007	exon	67775789	67775857	+
GWHAAZE00000007	CDS	67773171	67773191	+
GWHAAZE00000007	CDS	67773281	67773343	+
GWHAAZE00000007	CDS	67773597	67774256	+
GWHAAZE00000007	CDS	67774553	67774933	+
GWHAAZE00000007	CDS	67775789	67775857	+

Transcript Sequence
>GWHTAAZE025819 ATGCAGGAAGCTCGGATTAAGACTGCAATATTCATGGGGTGCAAGAATGGAGAGATCGAGCTAGGGTTGTCTAATGAAACTCAAGTTAACATGGAAATGGAAATGAAGAATTTGTTCCCGGAAGATTTCTCAAGACCAAGAGAGCCTTCGCAGCCACACGATCAAAATCGGCCTTCATCATCGTCATCATCATTGAGATCACTATCCATGGATAGCCCCGAGCCCTCTCCTTTCCTATTCAACATACCAAACACATCCTACATTCAAGATCCCTCCATTGAAACTCGTGTAGTTCAACAAGCAATGAGACCAATATCGACCACAACTACTACTCCACCAGTCCAACAAGCAATCGAAGCCCTAAGTCAAATTCGAAACATTCAATTCCCAACAATAGAGAGGGAAAATGTCGAAATGACCAAAGCCATCCTCGCTGTTTTGTCTTCTTCTTCACCTCCGTCTACTTCTTCATCCCAACCCCAGCTCCAAAAGGCTAGTGCATTCAAGAGTTATAGGTCGGTTTTGGGCCCCATGCCCCAAATTACAAGGAAACAAAATATGTTTAAGCGTGCAATCAAATTCTTCGCAGGCTTGACTCTGAGGAGGAACCAAGAACAAATCCAAGGGACAAGTACTCGGCCCTCGACTACTCAGTTGCATCATATGATATCTGAAAGAAGACGGCGAGAGAAGCTTAATGAAAGCTTCCAAGCATTGAGATCACTTCTTCCTCAAGGAACTAAGAGAGATAAAGCATCAGTGCTTACAAGCACAACAGAGTACTTAAGTTCATTAAAAGCTCAAGTCGAGGAACTTAGTCGAAGAAACCAGATCTTAGAGGCACAATTGCCTCGAAAAGACTCTATCAATCAAGAAGCAAGTGGAACATCTAGTGAAAGAGTCACTATTCAAATTACAGACGTCGGTGAATCAACATCAGATGCGCAAATAGTGGATTTGCAAGTGAGGGTTAGAGGAGAATATTGTAGCATGTTGGATTTGGTTATTAGAGTGATGGAGTTCTTGAAGCAGGATAGGAATGTAAGCTTAATGTCCATAGAAGCTCAACCAGTGACGGTGGACACAAATTCCATGAACAGAGTGGTTTTGAGATTGAAGATTGAGGGTGTTGATTGGGACAAGTCTGCCTTCCAAGAAGCCGTGAAAAGGGTTGTTGATGACCTGGCACAATGA

Network for GWHGAAZE025785

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	220	265	2.10E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.938
	SRR3591706	second leaf	0.347
	SRR3591707	mature leaf	0.518
	SRR3591708	Shoot apex	0.299
	SRR3591709	Stem	3.874
	SRR3591710	White floral bud	0.054
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.223
	SRR3591713	Yellow flower	0.465
SRP173429	SRR8316895	Juvenile bud stage	0.614
	SRR8316896	Juvenile bud stage	0.543
	SRR8316897	Juvenile bud stage	0.366
	SRR8316894	Third green stage	0.233
	SRR8316900	Third green stage	0.259
	SRR8316901	Third green stage	0.914
	SRR8316898	Complete white stage	0.240
	SRR8316899	Complete white stage	0.430
	SRR8316903	Complete white stage	0.171
	SRR8316902	Silver flowering stage	0.099
	SRR8316904	Silver flowering stage	0.375
	SRR8316905	Silver flowering stage	0.085
	SRR8316906	Gold flowering stage	0.338
	SRR8316907	Gold flowering stage	0.544
	SRR8316908	Gold flowering stage	1.608
SRP132670	SRR6706286	Control	0.646
	SRR6706287	Light intensity 50%	0.670
	SRR6706288	Light intensity 20%	0.522
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.850
	CNS0095593	Slightly white alabastrum(diploid) 2	0.978
	CNS0095594	Slightly white alabastrum(diploid) 3	0.726
	CNS0095595	Whole white alabastrum(diploid) 2	0.572
	CNS0095596	Whole white alabastrum(diploid) 3	0.488
	CNS0095597	Whole white alabastrum(diploid) 4	1.222
	CNS0095598	Silvery flower (diploied) 1	1.353
	CNS0095599	Silvery flower (diploied) 2	0.198
	CNS0095600	Silvery flower (diploied) 3	0.708
	CNS0095601	Golden flower (diploid) 1	0.869
	CNS0095602	Golden flower (diploid) 2	0.546
	CNS0095603	Golden flower (diploid) 3	0.385
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.018
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.662
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.174
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.654
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.584
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.791
	CNS0095610	Silvery flower (tetraploid) 1	0.304
	CNS0095611	Silvery flower (tetraploid) 2	0.073
	CNS0095612	Silvery flower (tetraploid) 3	0.739
	CNS0095613	Golden flower (tetraploid) 1	0.086
	CNS0095614	Golden flower (tetraploid) 2	0.174
	CNS0095615	Golden flower (tetraploid) 3	0.229
CRA001975	CRR073297	Stem 1	0.578
	CRR073298	Stem 2	0.755
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	1.314
	CRR073301	Leaf 2	0.329
	CRR073302	Leaf 3	0.078
	CRR073303	Juvenile bud 1	0.394
	CRR073304	Juvenile bud 2	0.212
	CRR073305	Juvenile bud 3	0.415
	CRR073306	Third green 1	0.090
	CRR073307	Third green 2	0.200
	CRR073308	Third green 3	0.145
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.038
	CRR073311	Second white 3	0.089
	CRR073312	Silver flowering 1	0.118
	CRR073313	Silver flowering 2	0.039
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.077
	CRR073316	Gold flowering 2	0.085
	CRR073317	Gold flowering 3	0.084
	CRR073318	Tawny withering 1	2.835
	CRR073319	Tawny withering 2	10.485
	CRR073320	Tawny withering 3	1.854