Detail information of GWHGAAZE025784


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002510773.10ATP-dependent RNA helicase, putative [Ricinus communis]
COGYP_113939.12E-134ATP-dependent helicase HrpA
Swissprottr|Q38953|DHX8_ARATH0Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|B9R8Y0|B9R8Y0_RICCO0ATP-dependent RNA helicase, putative {ECO:0000313|EMBL:EEF52960.1}
TAIR10AT3G26560.10ATP-dependent RNA helicase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6776181567764903+
GWHAAZE00000007mRNA6776181567764903+
GWHAAZE00000007exon6776181567763577+
GWHAAZE00000007exon6776451067764903+
GWHAAZE00000007CDS6776181567763577+
GWHAAZE00000007CDS6776451067764903+
Transcript Sequence

Network for GWHGAAZE025784

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD752243.60E-08
PF00271.32Helicase_C2663953.20E-11
PF04408.24HA24575458.50E-24
PF07717.17OB_NTP_bind6036781.70E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12818DHX8, PRP22 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0004386molecular_functionhelicase activity
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.547
SRR3591706second leaf1.998
SRR3591707mature leaf5.232
SRR3591708Shoot apex2.223
SRR3591709Stem6.240
SRR3591710White floral bud3.513
SRR3591711White flower5.005
SRR3591712Green floral bud3.548
SRR3591713Yellow flower1.945
SRP173429 SRR8316895Juvenile bud stage 1.667
SRR8316896Juvenile bud stage 2.334
SRR8316897Juvenile bud stage 0.879
SRR8316894Third green stage 0.770
SRR8316900Third green stage 2.621
SRR8316901Third green stage 2.369
SRR8316898Complete white stage 0.832
SRR8316899Complete white stage 2.231
SRR8316903Complete white stage 2.509
SRR8316902Silver flowering stage1.114
SRR8316904Silver flowering stage1.315
SRR8316905Silver flowering stage0.346
SRR8316906Gold flowering stage 1.666
SRR8316907Gold flowering stage 0.827
SRR8316908Gold flowering stage 0.738
SRP132670SRR6706286Control2.437
SRR6706287Light intensity 50%1.856
SRR6706288Light intensity 20%2.428
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.613
CNS0095593Slightly white alabastrum(diploid) 21.965
CNS0095594Slightly white alabastrum(diploid) 31.821
CNS0095595Whole white alabastrum(diploid) 22.154
CNS0095596Whole white alabastrum(diploid) 32.038
CNS0095597Whole white alabastrum(diploid) 41.907
CNS0095598Silvery flower (diploied) 11.880
CNS0095599Silvery flower (diploied) 22.090
CNS0095600Silvery flower (diploied) 33.010
CNS0095601Golden flower (diploid) 12.137
CNS0095602Golden flower (diploid) 22.267
CNS0095603Golden flower (diploid) 32.070
CNS0095604Slightly white alabastrum(tetraploid) 11.935
CNS0095605Slightly white alabastrum(tetraploid) 21.677
CNS0095606Slightly white alabastrum(tetraploid) 32.860
CNS0095607Whole white alabastrum(tetraploid) 10.821
CNS0095608Whole white alabastrum(tetraploid) 21.045
CNS0095609Whole white alabastrum(tetraploid) 31.815
CNS0095610Silvery flower (tetraploid) 11.415
CNS0095611Silvery flower (tetraploid) 21.906
CNS0095612Silvery flower (tetraploid) 32.973
CNS0095613Golden flower (tetraploid) 10.586
CNS0095614Golden flower (tetraploid) 21.251
CNS0095615Golden flower (tetraploid) 30.695
CRA001975CRR073297Stem 12.360
CRR073298Stem 22.121
CRR073299Stem 31.123
CRR073300Leaf 12.246
CRR073301Leaf 21.411
CRR073302Leaf 30.648
CRR073303Juvenile bud 10.816
CRR073304Juvenile bud 21.237
CRR073305Juvenile bud 31.530
CRR073306Third green 10.506
CRR073307Third green 20.393
CRR073308Third green 30.573
CRR073309Second white 10.317
CRR073310Second white 20.229
CRR073311Second white 30.939
CRR073312Silver flowering 10.200
CRR073313Silver flowering 20.182
CRR073314Silver flowering 30.450
CRR073315Gold flowering 10.828
CRR073316Gold flowering 21.518
CRR073317Gold flowering 30.750
CRR073318Tawny withering 11.642
CRR073319Tawny withering 20.468
CRR073320Tawny withering 31.068