Gene detail

Detail information of GWHGAAZE025779

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656194.1	0	PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X3 [Vitis vinifera]
COG	YP_004092358.1	2E-24	serine/threonine protein kinase with PASTA sensor(s)
Swissprot	tr\|Q8RWW0\|ALE2_ARATH	0	Receptor-like serine/threonine-protein kinase ALE2 (Precursor)
trEMBL	tr\|A0A061GKP4\|A0A061GKP4_THECC	0	Serine/threonine-protein kinase PBS1 isoform 8 {ECO:0000313\|EMBL:EOY30455.1}
TAIR10	AT5G56890.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67632267	67640494	-
GWHAAZE00000007	mRNA	67632267	67640494	-
GWHAAZE00000007	exon	67640413	67640494	-
GWHAAZE00000007	exon	67639601	67639705	-
GWHAAZE00000007	exon	67639096	67639323	-
GWHAAZE00000007	exon	67638876	67639016	-
GWHAAZE00000007	exon	67638682	67638774	-
GWHAAZE00000007	exon	67638490	67638579	-
GWHAAZE00000007	exon	67638243	67638356	-
GWHAAZE00000007	exon	67637962	67638150	-
GWHAAZE00000007	exon	67637768	67637857	-
GWHAAZE00000007	exon	67637454	67637513	-
GWHAAZE00000007	exon	67637226	67637333	-
GWHAAZE00000007	exon	67636268	67636639	-
GWHAAZE00000007	exon	67635486	67635782	-
GWHAAZE00000007	exon	67634506	67634895	-
GWHAAZE00000007	exon	67633735	67633978	-
GWHAAZE00000007	exon	67632502	67633258	-
GWHAAZE00000007	exon	67632267	67632370	-
GWHAAZE00000007	CDS	67640413	67640494	-
GWHAAZE00000007	CDS	67639601	67639705	-
GWHAAZE00000007	CDS	67639096	67639323	-
GWHAAZE00000007	CDS	67638876	67639016	-
GWHAAZE00000007	CDS	67638682	67638774	-
GWHAAZE00000007	CDS	67638490	67638579	-
GWHAAZE00000007	CDS	67638243	67638356	-
GWHAAZE00000007	CDS	67637962	67638150	-
GWHAAZE00000007	CDS	67637768	67637857	-
GWHAAZE00000007	CDS	67637454	67637513	-
GWHAAZE00000007	CDS	67637226	67637333	-
GWHAAZE00000007	CDS	67636268	67636639	-
GWHAAZE00000007	CDS	67635486	67635782	-
GWHAAZE00000007	CDS	67634506	67634895	-
GWHAAZE00000007	CDS	67633735	67633978	-
GWHAAZE00000007	CDS	67632568	67633258	-
GWHAAZE00000007	three_prime_UTR	67632502	67632567	-
GWHAAZE00000007	three_prime_UTR	67632267	67632370	-

Transcript Sequence
>GWHTAAZE025813 ATGGGTCTCGTGATGCAATTCATTTGGTTGGTGCTTATAGTTTGTGCCATTGGTAGTTCTTTGGTTATTCAAGGATCTGCAGAAGACGGCACATCCCCAACTCCAGCAACTTTCTTTGCAACTCCGCCTATAGGAGAAGGAAAATCCAGTAAAAGCAACACAACTAGTCCAGCACCCCAGCCAAACGGCTCATATTTTCAACCTCCAATTGTATTGCCACCTCTCAAGCCTGCACCCGTACCCGAAATTATCAATGGTCAAGCACCATTATTGTCACCAAGTACTCCTACTGCGTTGCCACCGTCTAGTTCAAATGCCCCACCCCTAACTTCTCAAGTACCATCTTTGCCACCAAGTGGTCCTCAAACAAAGCCGCCACAAACTAACGAACCTCTATTGGCACCACAAGCTCCAGTACCCATTGTACCGCCTTCGATAAAATCACCACAAAATGCACCATCCATCCGTCCGCCTATGCCAATATCTGTGCCCCCGAGTTCTCATCAAAGCAAGATACCGGATAATAAAGTTCCTGTCCCTGTGCCAATTGCTCCAGTACAAAATGCACCGCCGCCAAGGGAGATGCTGCAGCATCCGCCACCTGTCCAGCCCATCATGCCTGAAGCACCCCCACCGTCCATTTTGCCTGTGCCCGTAACGTCTCCTCCAACAAACTTGCCAAGAAATTCACCGCCCATCCACCCTACGGTCCCGAAAGTACCTCCACCCGGTTTACCAGAACCCGATGTTTCACCAGTATCAGCTCCTCCCCCAAGCAATAACTCGAAAACGGATCCCATACCAACTGCTGCACCTCCAAATTTAATGCCAAAAGGGATTGCTCCAGTGAAAACTCCACAGCAATCTATTAATGCTCCTCCGCCTCTTCTGAATATTAAATCTCCTCCTAATAAAAAAATCCATCCACCGGCATCATTACCTTCAAGCTCCTTTAATAGGCATCATAATGCAACTAAAAATATTACTAGTCCGGCTCCATTATCGATTCTGGTTCCTCCTCCTCCTCCTCCAACTCATCAAGGTTCATTCATCCCTCCAGCTCCTTTATATCCTCCAAAATTAAATCCAGATAATAAGCAGAGGCACCATACAGCTCCACCCTTATATACAGAGCATCCTATTTCACTGGAACCCACACCTTCTCCGGTATCTCCTTCTGTACAGACTACAGTGCCCTTTCTTTCCCCTAAAATTTCTCCTTCTCGGTCTTCACCAAGTATTCCAAAGATGCCACTTTTGACGCCATTTCACGCATTACCACCTCCACCACCAAATGAAGATTGCACATCACTAACATGCACGGAGCCGTTAACAAATACTCCTCCTGGATCTCCGTGTGGCTGTGTCTGGCCTATGCAAGTTGGACTTCGCCTAAGTGTAGCATTATATACATTCTTCCCTTTGGTCTCGGAGCTGGCTAATGAAATTGCTGTTGGGGTATTTATGAGACAAAGTCAAGTTCGAATAATGGGAGCAAATGCAGCTAGCCAAGATCCAGAAAAAACCATTGTCTTAATTGATTTGGTACCTCTTGGAGAAAGAATTGATAACACTACCGCTTACCTGATATTTGATAGATTCTGGCATAAACAAGTGCTTATAAGAACTTCATTTTTTGGTGATTATGATGTTTTATATGTGCACTATCCAGGTCTTCCTCCATCTCCACCTTCGGCACCTTCAAACGAGAATATTATAGGTAGTGATCCATATACTGGTAATGACAATAATGGGATTACCCGAAAACCTCTAGGAGTTGATGTCAGGGGGCGGAGCCATAAAGATGGGCTTAATAGGGGTGTCATTGCAATAATAGTTTTGTCAGCCTCAATAGCCGTGATTTTGTGTTGCGCAATCGCTTGGGTTTTGTTGTTCAAAAATAGAGACCGTGTTTGCCAACCAGATCAACCTCCACCACCCACAGTACCTTCCTTTGCAAAGTCATCAGGGGCTGCTGCATCTATGATTGGTAGTGTGCCCAGCTCGGTTTCACTATCCTTTGGATCGAGCATTGCGCCTTATACTGGATCTGCAAAGACATATAGTTCAAGTGACATAGAAAGGGCAACTGATAACTTCAACGAATCAAGAATACTGGGTGAAGGTGGCTTTGGCCGTGTTTATAGCGGCGTTCTTGACGACGGTACAAAAGTGGCTGTCAAAGTACTGAAGAGAGATGATCAGCAAGGCGGTCGTGAATTCTTGGCTGAAGTTGAAATGCTTAGCCGCCTTCACCACAGGAACTTGGTCAAGTTGATTGGTATATGTACAGAGGAGCGTTCTCGTTGCTTAGTTTATGAACTAATTCCCAATGGCAGTGTGGAATCTCATCTGCATGGCGTTGACAGGGATAATGCTCCACTTGACTGGGTCAACCGTATGAAGATTGCACTTGGGGCAGCTCGGGGTTTAGCTTATCTGCATGAAGATTCAAGTCCACGTGTCATACACAGGGACTTCAAATCCAGCAATATATTATTGGAACATGATTTTACGCCAAGAGTGTCCGATTTTGGCTTGGCTCGATCGGCATTGGACGAGGAAAACAGGCACATCTCCACTCGCGTCATGGGAACTTTTGGATACGTGGCTCCGGAATACGCCATGACTGGTCATCTTCTCGTGAAGAGTGACGTTTACAGCTACGGCGTAGTCCTTCTTGAACTTCTAACAGGAAGAAAACCCGTAGACATGTCTCAACCGCCCGGTCAAGAGAATCTCGTTGCATGGGCTCGTCCCCGCCTCACAACTAAAGAAAGTCTAGAATCGATTATAGACCCGTCTCTCGGTCCCAATTTTCCTTTAGATAGTATTGCAAAAGTAGCTGCTATAGCTTCCATGTGTGTTCAACCTGAGGTATCGCACCGGCCCTTTATGGGGGAGGTGGTTCAGGCCTTGAAACTAGTATGCAACGAGTGCGAAGAGGCACAGGACTTGGGATCAAGAACTTGTAGCCAAGAAAACCTGTCCATCGATTTTGACCAACGGGTCGGCTCAAATTCGGGTCCATTACTGGATCCTGCCCAAACCCGTTCCCCCATGTCGGATTATGGGTCACCCCTCGATGTTGAGAGGGGGCTTTCGGGGTCGGATTTGTATAGCGGGTCATCGAGATATGGAAGATACGAGCCTGGTTCGTTTAGAAGACACTCGAGCTCGGGTCCTTTGATAGCACGAAGGAGCTTGCCGCTTTGGCAGAGGATGAGGAGATTGTCCGGTGGCAGTGTGAGCGAGCATGGAGTCTTGCACCGGTTATGGCCCAGGTCCCACTGACGCTATTACAGGACATTGTGATGCATCGCTCATGTGGAGCTTATACAGAATCCAGTTGTAGTAATAGGAAATTGGGGGATACTTGTCAACATCCGATTGGTCTTGAAGAAATTTTGGATAATTTGGGAAAACGATGGTTGAAACTGATGAGTTTGTTGCATAGTTTTTGT

Network for GWHGAAZE025779

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	703	973	4.80E-49

Protein Sequence

>GWHPAAZE025797
MGLVMQFIWLVLIVCAIGSSLVIQGSAEDGTSPTPATFFATPPIGEGKSSKSNTTSPAPQPNGSYFQPPIVLPPLKPAPVPEIINGQAPLLSPSTPTALPPSSSNAPPLTSQVPSLPPSGPQTKPPQTNEPLLAPQAPVPIVPPSIKSPQNAPSIRPPMPISVPPSSHQSKIPDNKVPVPVPIAPVQNAPPPREMLQHPPPVQPIMPEAPPPSILPVPVTSPPTNLPRNSPPIHPTVPKVPPPGLPEPDVSPVSAPPPSNNSKTDPIPTAAPPNLMPKGIAPVKTPQQSINAPPPLLNIKSPPNKKIHPPASLPSSSFNRHHNATKNITSPAPLSILVPPPPPPTHQGSFIPPAPLYPPKLNPDNKQRHHTAPPLYTEHPISLEPTPSPVSPSVQTTVPFLSPKISPSRSSPSIPKMPLLTPFHALPPPPPNEDCTSLTCTEPLTNTPPGSPCGCVWPMQVGLRLSVALYTFFPLVSELANEIAVGVFMRQSQVRIMGANAASQDPEKTIVLIDLVPLGERIDNTTAYLIFDRFWHKQVLIRTSFFGDYDVLYVHYPGLPPSPPSAPSNENIIGSDPYTGNDNNGITRKPLGVDVRGRSHKDGLNRGVIAIIVLSASIAVILCCAIAWVLLFKNRDRVCQPDQPPPPTVPSFAKSSGAAASMIGSVPSSVSLSFGSSIAPYTGSAKTYSSSDIERATDNFNESRILGEGGFGRVYSGVLDDGTKVAVKVLKRDDQQGGREFLAEVEMLSRLHHRNLVKLIGICTEERSRCLVYELIPNGSVESHLHGVDRDNAPLDWVNRMKIALGAARGLAYLHEDSSPRVIHRDFKSSNILLEHDFTPRVSDFGLARSALDEENRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGQENLVAWARPRLTTKESLESIIDPSLGPNFPLDSIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNECEEAQDLGSRTCSQENLSIDFDQRVGSNSGPLLDPAQTRSPMSDYGSPLDVERGLSGSDLYSGSSRYGRYEPGSFRRHSSSGPLIARRSLPLWQRMRRLSGGSVSEHGVLHRLWPRSH

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_Extensin

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.863
	SRR3591706	second leaf	31.524
	SRR3591707	mature leaf	17.554
	SRR3591708	Shoot apex	29.887
	SRR3591709	Stem	38.186
	SRR3591710	White floral bud	38.460
	SRR3591711	White flower	36.248
	SRR3591712	Green floral bud	34.592
	SRR3591713	Yellow flower	22.217
SRP173429	SRR8316895	Juvenile bud stage	18.957
	SRR8316896	Juvenile bud stage	21.805
	SRR8316897	Juvenile bud stage	9.537
	SRR8316894	Third green stage	14.809
	SRR8316900	Third green stage	36.501
	SRR8316901	Third green stage	33.878
	SRR8316898	Complete white stage	7.875
	SRR8316899	Complete white stage	23.810
	SRR8316903	Complete white stage	29.775
	SRR8316902	Silver flowering stage	16.155
	SRR8316904	Silver flowering stage	22.856
	SRR8316905	Silver flowering stage	9.724
	SRR8316906	Gold flowering stage	25.158
	SRR8316907	Gold flowering stage	32.755
	SRR8316908	Gold flowering stage	24.709
SRP132670	SRR6706286	Control	30.503
	SRR6706287	Light intensity 50%	32.598
	SRR6706288	Light intensity 20%	33.542
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.798
	CNS0095593	Slightly white alabastrum(diploid) 2	23.387
	CNS0095594	Slightly white alabastrum(diploid) 3	19.316
	CNS0095595	Whole white alabastrum(diploid) 2	16.818
	CNS0095596	Whole white alabastrum(diploid) 3	13.448
	CNS0095597	Whole white alabastrum(diploid) 4	15.290
	CNS0095598	Silvery flower (diploied) 1	31.905
	CNS0095599	Silvery flower (diploied) 2	23.901
	CNS0095600	Silvery flower (diploied) 3	40.727
	CNS0095601	Golden flower (diploid) 1	21.134
	CNS0095602	Golden flower (diploid) 2	32.579
	CNS0095603	Golden flower (diploid) 3	30.149
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.829
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.144
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.760
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.615
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.326
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.965
	CNS0095610	Silvery flower (tetraploid) 1	37.731
	CNS0095611	Silvery flower (tetraploid) 2	41.795
	CNS0095612	Silvery flower (tetraploid) 3	35.886
	CNS0095613	Golden flower (tetraploid) 1	17.338
	CNS0095614	Golden flower (tetraploid) 2	30.124
	CNS0095615	Golden flower (tetraploid) 3	23.400
CRA001975	CRR073297	Stem 1	50.133
	CRR073298	Stem 2	49.760
	CRR073299	Stem 3	22.749
	CRR073300	Leaf 1	52.062
	CRR073301	Leaf 2	56.772
	CRR073302	Leaf 3	23.979
	CRR073303	Juvenile bud 1	21.541
	CRR073304	Juvenile bud 2	16.549
	CRR073305	Juvenile bud 3	36.892
	CRR073306	Third green 1	15.111
	CRR073307	Third green 2	11.852
	CRR073308	Third green 3	18.117
	CRR073309	Second white 1	12.490
	CRR073310	Second white 2	10.996
	CRR073311	Second white 3	11.910
	CRR073312	Silver flowering 1	7.449
	CRR073313	Silver flowering 2	9.515
	CRR073314	Silver flowering 3	9.210
	CRR073315	Gold flowering 1	6.139
	CRR073316	Gold flowering 2	11.108
	CRR073317	Gold flowering 3	4.865
	CRR073318	Tawny withering 1	20.574
	CRR073319	Tawny withering 2	18.388
	CRR073320	Tawny withering 3	19.274