Gene detail

Detail information of GWHGAAZE025760

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03185.1	0	unnamed protein product [Coffea canephora]
COG	YP_005269820.1	1E-22	serine/threonine-protein kinase PrkC
Swissprot	tr\|Q1PEM5\|PERK3_ARATH	1E-96	Proline-rich receptor-like protein kinase PERK3
trEMBL	tr\|A0A068U3U8\|A0A068U3U8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313\|EMBL:CDP03185.1}
TAIR10	AT3G13690.1	0	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67338500	67345768	+
GWHAAZE00000007	mRNA	67338500	67345768	+
GWHAAZE00000007	exon	67338500	67339064	+
GWHAAZE00000007	exon	67339856	67339992	+
GWHAAZE00000007	exon	67340099	67340193	+
GWHAAZE00000007	exon	67340974	67341965	+
GWHAAZE00000007	exon	67342626	67342786	+
GWHAAZE00000007	exon	67343958	67344034	+
GWHAAZE00000007	exon	67344124	67344271	+
GWHAAZE00000007	exon	67344700	67344849	+
GWHAAZE00000007	exon	67345730	67345768	+
GWHAAZE00000007	five_prime_UTR	67338500	67338883	+
GWHAAZE00000007	CDS	67338884	67339064	+
GWHAAZE00000007	CDS	67339856	67339992	+
GWHAAZE00000007	CDS	67340099	67340193	+
GWHAAZE00000007	CDS	67340974	67341965	+
GWHAAZE00000007	CDS	67342626	67342786	+
GWHAAZE00000007	CDS	67343958	67344034	+
GWHAAZE00000007	CDS	67344124	67344271	+
GWHAAZE00000007	CDS	67344700	67344849	+
GWHAAZE00000007	CDS	67345730	67345768	+

Transcript Sequence
>GWHTAAZE025794 GAAATTTTGGCGAAGGGTTTAATTGGTTTGGGTAATTGGGTGAATTGAAATGAGGGTCTGAGGGATTTTCTTGGAAAACTCACACTTGAGGGGAAAACCCTTTTGGGAGTTTGTTGATTTTGAGCTTGTTGGGATTGATAAAATTTTGGGTTGAATGGGTTTGGTGAATTGAAATGAGGGTTTGAGTGGAATTGAAATGAGGGTTTGAGTGATTTTATTGGAAAAATCACATTATAGGCGCAGACCCTTTTGTGTTTTTTTTTTTTGATATTGAGGTTGAGCTTGTTGTGATTGGGAAAATTTTGTTGAACAGGGGTTAATGAGCTTGGAGAAATCAGTGAATTGAGATGAGGGTTTGAGTGATTTTGGGTGTTGGGTTTTGAGATGAATATGAGGCAAAAGAGTGGTAAAGAGAAGGGGTGTGATGTTGGGGAGAGAGTTGTGCTTGTTGTTGTCAAAGCATCTAAAGAGATCCCAAGAAGTGCTTTGGTGTGGGCTTTAACTCACGTTGTTCAACCTGGGGATTGTGCTAAGCTGCTTGTGGTCATCCCTGCACACAGCTCAAGCAAAAAATTATGGGGTTTACCAAGATTTAATAGTGATTGCGCTGCTGGAAATTGGAGATCTCTCTCGGGAACAATTTCAGATCAGAAAGAGGAAATTTCAGATTCTTGCACCCAGCTGATGCTTCAACTCCATGATATAAAGATGAAGATAAAAGTTGTCTCAGGCTCGTCAAGTGGAGTAGTTGCAACTGAAGCCAAGAAATCTCAAACACAATGGGTTGTATTGGATAAACAGTTGAAAAAAGAGGCGAAACTATGCATGGAACAGCTCGAATGCAATGTTGTGGTAATGAAGAAGTCCCAGCCCAAGGTTTTACGTCTAAATCTGGTTGGCTCACCTACAACGGAACCCGAGGAGCTCTCTGGATCAGAAAAATCTGCAGAACACGTGAAAAAAAACTTCGATTTGCAGAACGAAACTCGAGTTCCCAATGTGACTCCTGCCAGCAGTCCAGAGCATTCACCATTCTCCACAACCGATGTTGGAACATCGTCAATATCAAGCTTAGATCCAACGAACTCTCCATTTTTCATCTCAGAAATTAATTGGGACAGGAAAAAAGATTCTTTGGTTTATACTGATAGGATTTACAATCTTGATGAATCTGATTCTGATACGGATAGTGAAAAGATGAGTTCTCCTTCAACAAGCTTATCTTCAGATGTTCCCAGTTCCTCTGAGTTAGCGAAGTATTTGATGGGATCTTCACGAGGATCCAACGGTCTAAATTCGAGGCCCGAATCCTTGTGGGGTAAATTCTCTGAACTCGAGCGAGAGCACGAAGTTCGAGATAGGTTGAATCTCAACTCGAGCAAGAATGTGAGGGAAATGATATCGTTACCCCGAAGTTCACCCCTCGAACCTCCTCCGTTGTGTTCAATATGCCAGCACAAAGCGCCTGTTTTTGGAAAACCGCCGAGGTGGTTCACATATGGCGAGCTCGAGCACGCTACACGAAGATTCTCTGAAGCTAATTTCCTGGCTGAAGGTGGATATGGCTCTGTACACCGAGGGGTGTTACCGGATGGCCAGGTCGTCGCTGTAAAGCAGCATAAGTTGGCCAGTTCTCAGGGTGATCATGAATTTTGCTCTGAAGTCGAGGTTTTAAGCTGTGCTCAGCATCGTAATGTTGTGATGCTGATTGGATTATGTGTTGAGGATGGAAGGAGGTTGCTTGTTTATGAATATATTTGCAATGGGTCTTTGGATTCTCACCTCTATGGACATGATCGAGATCCACTAGAATGGTCGGCACGGCAAAAGATTGCAGTTGGAGCTGCCCGAGGGCTGAGGTACCTTCATGAAGAATGTAGAGTTGGTTGTATAGTACATCGTGATATGCGGCCTAACAATATTCTACTCACTCATGATTTTGAGCCATTAGTTGGAGACTTTGGACTAGCAAGGTGGCAGCCAGATGGAGATTTGGGTGTGGAAACAAGAATAATTGGAACCTTTGGGTACTTGGCTCCGGAATATGCTCAAAGTGGCGAAATTACCGAAAAGGCCGACGTGTATTCCTTTGGGATTGTATTAGTGGAACTCATCACAGGAAGGAAAGCCATAGATATAAGTCGCCCGAAGGGCCAACAGTGCCTTTCTGAATGGGCTCGTCCGTTGCTGAAAGAAAATTTTGTTGAGGAACTGGTCGATCCACGATTAAGGAAGTGCTATTCAGAGAAAGAGCTTAATAGCATGCTGCGTTGTGCTTCCATGTGCATTCGACGAGATCCTCATTTGAGGCCTCGAATGTCTCAGGTGCTACGAATGTTGGAAGGTGATAATCTCATGGACTAA

Network for GWHGAAZE025760

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	387	652	1.50E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.067
	SRR3591706	second leaf	7.376
	SRR3591707	mature leaf	10.349
	SRR3591708	Shoot apex	17.977
	SRR3591709	Stem	22.209
	SRR3591710	White floral bud	15.695
	SRR3591711	White flower	15.994
	SRR3591712	Green floral bud	11.089
	SRR3591713	Yellow flower	11.364
SRP173429	SRR8316895	Juvenile bud stage	8.474
	SRR8316896	Juvenile bud stage	10.736
	SRR8316897	Juvenile bud stage	4.264
	SRR8316894	Third green stage	5.861
	SRR8316900	Third green stage	11.607
	SRR8316901	Third green stage	11.055
	SRR8316898	Complete white stage	4.088
	SRR8316899	Complete white stage	17.094
	SRR8316903	Complete white stage	7.316
	SRR8316902	Silver flowering stage	5.088
	SRR8316904	Silver flowering stage	9.889
	SRR8316905	Silver flowering stage	4.275
	SRR8316906	Gold flowering stage	8.253
	SRR8316907	Gold flowering stage	9.471
	SRR8316908	Gold flowering stage	8.859
SRP132670	SRR6706286	Control	10.253
	SRR6706287	Light intensity 50%	12.280
	SRR6706288	Light intensity 20%	12.752
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.076
	CNS0095593	Slightly white alabastrum(diploid) 2	5.055
	CNS0095594	Slightly white alabastrum(diploid) 3	5.208
	CNS0095595	Whole white alabastrum(diploid) 2	4.524
	CNS0095596	Whole white alabastrum(diploid) 3	3.476
	CNS0095597	Whole white alabastrum(diploid) 4	3.819
	CNS0095598	Silvery flower (diploied) 1	10.949
	CNS0095599	Silvery flower (diploied) 2	8.009
	CNS0095600	Silvery flower (diploied) 3	9.646
	CNS0095601	Golden flower (diploid) 1	6.047
	CNS0095602	Golden flower (diploid) 2	9.151
	CNS0095603	Golden flower (diploid) 3	7.982
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.455
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.905
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.642
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.979
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.326
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.571
	CNS0095610	Silvery flower (tetraploid) 1	5.859
	CNS0095611	Silvery flower (tetraploid) 2	6.631
	CNS0095612	Silvery flower (tetraploid) 3	12.481
	CNS0095613	Golden flower (tetraploid) 1	2.780
	CNS0095614	Golden flower (tetraploid) 2	3.749
	CNS0095615	Golden flower (tetraploid) 3	5.370
CRA001975	CRR073297	Stem 1	25.930
	CRR073298	Stem 2	21.073
	CRR073299	Stem 3	17.734
	CRR073300	Leaf 1	18.871
	CRR073301	Leaf 2	19.648
	CRR073302	Leaf 3	13.455
	CRR073303	Juvenile bud 1	10.838
	CRR073304	Juvenile bud 2	6.663
	CRR073305	Juvenile bud 3	13.047
	CRR073306	Third green 1	5.842
	CRR073307	Third green 2	8.190
	CRR073308	Third green 3	8.780
	CRR073309	Second white 1	4.168
	CRR073310	Second white 2	8.209
	CRR073311	Second white 3	8.206
	CRR073312	Silver flowering 1	5.622
	CRR073313	Silver flowering 2	2.311
	CRR073314	Silver flowering 3	4.763
	CRR073315	Gold flowering 1	5.677
	CRR073316	Gold flowering 2	10.748
	CRR073317	Gold flowering 3	4.445
	CRR073318	Tawny withering 1	25.536
	CRR073319	Tawny withering 2	18.055
	CRR073320	Tawny withering 3	25.984