Gene detail

Detail information of GWHGAAZE025752

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093686.1	0	PREDICTED: protein arginine N-methyltransferase 1.1 [Sesamum indicum]
COG	YP_007057479.1	3E-31	50S ribosomal protein L11 methylase
Swissprot	tr\|Q9SU94\|ANM11_ARATH	0	Protein arginine N-methyltransferase 1.1
trEMBL	tr\|M5W9A1\|M5W9A1_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ03380.1}
TAIR10	AT4G29510.1	4E-159	arginine methyltransferase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67214033	67218060	+
GWHAAZE00000007	mRNA	67214033	67218060	+
GWHAAZE00000007	exon	67214033	67214215	+
GWHAAZE00000007	exon	67215755	67215818	+
GWHAAZE00000007	exon	67215977	67216119	+
GWHAAZE00000007	exon	67216323	67216410	+
GWHAAZE00000007	exon	67216724	67216839	+
GWHAAZE00000007	exon	67217147	67217297	+
GWHAAZE00000007	exon	67217735	67218060	+
GWHAAZE00000007	CDS	67214033	67214215	+
GWHAAZE00000007	CDS	67215755	67215818	+
GWHAAZE00000007	CDS	67215977	67216119	+
GWHAAZE00000007	CDS	67216323	67216410	+
GWHAAZE00000007	CDS	67216724	67216839	+
GWHAAZE00000007	CDS	67217147	67217297	+
GWHAAZE00000007	CDS	67217735	67217940	+
GWHAAZE00000007	three_prime_UTR	67217941	67218060	+

Transcript Sequence
>GWHTAAZE025786 ATGCGTCTCACTTCTCTTACATTACAGGAAATGTTGAAGGATTCAGTGAGGACTAAGACGTACCAAAATGTTATTTATAAGAATCCGTTTTTATTCAAGGACAAGGTGGTCCTTGATGTAGGTGCTGGGACTGGTATTTTGTCCCTCTTTTGTGCGAAAGCAGGGGCAAAGCATGTTTATGCGGTCGAGTGCTCCCAAATGGCCGATATGGCTCAAGAGATTGTGAAAACAAATGGTTTTTCAAATGTTATAACTGTCTTGAAGGGGAAGATTGAAGAAATAGAGCTTCCGGTTGCTCAAGTGGATATTATTATTTCCGAATGGATGGGATACTTTTTGCTGTATGAGAACATGTTGAATACAGTATTATATGCTCGGGATAAATGGCTAGTCAGCAATGGACTTGTGCTACCTGATAAAGCTTCTCTCTATTTAACAGCAATAGAGGATGCCGAATACAAAGAAGACAAGATTGAATTTTGGAACAATGTATTTGGCTTCAACATGAGCTGCATCAGAAAGCAATCCATGATGGAACCTCTTGTTGATACAGTTGACCAGAATCAGATTGTCACAAACTCCCAGTTACTCAAGACGATGGATATCTCAAAGATGACTGCTGGGGATGCTTCCTTCACAGCTCCATTTAAGCTTGTGGCAGAACGTGATGATTATGTTCATGCCCTTGTAGCATACTTTGATGTAACATTTACCAAGTGTCATAAATTAACTGGCTTCTCTACAGGACCAAAGTCGAGGGCTACGCATTGGAAGCAGACGGTCCTATACCTAGAAGATGTGTTAACCATATGCCAAGGCGAAGCCATAATAGGCAACATGACTGTTTCTCAGAACAAGAAGAATCCACGCGATGTTGATATAACCCTCAAGTACTCGTTAAATGGGCTTCGGTGCCTCATCTCAAGAACCCAATCCTACAAAATGCGCTAAATCTATTCTCGAAAATATTCAATACGAGAAAATACCCAGAATTCCAAGAGCAAGGGATGGTTTTTTCTTTTCCTAGGAGTCATCAGTGAATGATGCTCATTAAGGGATTTTTTCAGTGGG

Network for GWHGAAZE025752

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06325.14	PrmA	33	107	8.20E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11434	PRMT1	FoxO signaling pathway	map04068
K11434	PRMT1	Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006479	biological_process	protein methylation
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.234
	SRR3591706	second leaf	13.551
	SRR3591707	mature leaf	17.451
	SRR3591708	Shoot apex	24.275
	SRR3591709	Stem	22.902
	SRR3591710	White floral bud	18.460
	SRR3591711	White flower	23.966
	SRR3591712	Green floral bud	32.036
	SRR3591713	Yellow flower	21.409
SRP173429	SRR8316895	Juvenile bud stage	8.881
	SRR8316896	Juvenile bud stage	14.349
	SRR8316897	Juvenile bud stage	6.088
	SRR8316894	Third green stage	5.483
	SRR8316900	Third green stage	16.677
	SRR8316901	Third green stage	14.663
	SRR8316898	Complete white stage	3.256
	SRR8316899	Complete white stage	20.644
	SRR8316903	Complete white stage	5.390
	SRR8316902	Silver flowering stage	4.128
	SRR8316904	Silver flowering stage	4.687
	SRR8316905	Silver flowering stage	2.316
	SRR8316906	Gold flowering stage	5.725
	SRR8316907	Gold flowering stage	7.065
	SRR8316908	Gold flowering stage	7.032
SRP132670	SRR6706286	Control	8.724
	SRR6706287	Light intensity 50%	10.478
	SRR6706288	Light intensity 20%	11.572
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.326
	CNS0095593	Slightly white alabastrum(diploid) 2	12.396
	CNS0095594	Slightly white alabastrum(diploid) 3	7.799
	CNS0095595	Whole white alabastrum(diploid) 2	9.356
	CNS0095596	Whole white alabastrum(diploid) 3	8.411
	CNS0095597	Whole white alabastrum(diploid) 4	6.789
	CNS0095598	Silvery flower (diploied) 1	9.831
	CNS0095599	Silvery flower (diploied) 2	7.696
	CNS0095600	Silvery flower (diploied) 3	6.302
	CNS0095601	Golden flower (diploid) 1	8.305
	CNS0095602	Golden flower (diploid) 2	8.024
	CNS0095603	Golden flower (diploid) 3	6.931
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.857
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.087
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.211
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.937
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.381
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.716
	CNS0095610	Silvery flower (tetraploid) 1	8.786
	CNS0095611	Silvery flower (tetraploid) 2	9.593
	CNS0095612	Silvery flower (tetraploid) 3	4.288
	CNS0095613	Golden flower (tetraploid) 1	8.945
	CNS0095614	Golden flower (tetraploid) 2	8.789
	CNS0095615	Golden flower (tetraploid) 3	3.399
CRA001975	CRR073297	Stem 1	12.229
	CRR073298	Stem 2	11.044
	CRR073299	Stem 3	5.861
	CRR073300	Leaf 1	10.354
	CRR073301	Leaf 2	13.032
	CRR073302	Leaf 3	7.364
	CRR073303	Juvenile bud 1	5.439
	CRR073304	Juvenile bud 2	4.496
	CRR073305	Juvenile bud 3	4.457
	CRR073306	Third green 1	0.344
	CRR073307	Third green 2	1.201
	CRR073308	Third green 3	0.672
	CRR073309	Second white 1	1.406
	CRR073310	Second white 2	0.768
	CRR073311	Second white 3	1.118
	CRR073312	Silver flowering 1	0.329
	CRR073313	Silver flowering 2	0.239
	CRR073314	Silver flowering 3	0.509
	CRR073315	Gold flowering 1	5.408
	CRR073316	Gold flowering 2	4.044
	CRR073317	Gold flowering 3	1.635
	CRR073318	Tawny withering 1	4.764
	CRR073319	Tawny withering 2	8.381
	CRR073320	Tawny withering 3	7.231