Gene detail

Detail information of GWHGAAZE025738

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008459153.1	1.5976E-105	PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Cucumis melo]
Swissprot	tr\|Q9SZE4\|VP322_ARATH	8E-96	Vacuolar protein sorting-associated protein 32 homolog 2
trEMBL	tr\|A0A0A0LHT5\|A0A0A0LHT5_CUCSA	2E-105	Uncharacterized protein {ECO:0000313\|EMBL:KGN60554.1}
TAIR10	AT2G19830.1	4E-52	SNF7 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67041460	67044480	-
GWHAAZE00000007	mRNA	67041460	67044480	-
GWHAAZE00000007	exon	67041460	67041657	-
GWHAAZE00000007	exon	67043309	67043423	-
GWHAAZE00000007	exon	67044010	67044101	-
GWHAAZE00000007	exon	67044199	67044284	-
GWHAAZE00000007	exon	67044390	67044480	-
GWHAAZE00000007	CDS	67044390	67044480	-
GWHAAZE00000007	CDS	67044199	67044284	-
GWHAAZE00000007	CDS	67044010	67044101	-
GWHAAZE00000007	CDS	67043309	67043423	-
GWHAAZE00000007	CDS	67041460	67041657	-

Transcript Sequence
>GWHTAAZE025772 ATGCTTGAAAAAAAGGAGAAAGTACTTTCAAAGAAAGCTGCTACAGAGGTTGAAAAGGCCAAGGAATTTACCCGAGCGAAGAACAAAAAAGCGGCTATACAATGTTTGAAGAGGAAGAGGCTCTATGAACAGCAGATTGAACAGCTTGGTAATTATCAATTGCGGATCCACGATCAGATGATAATGTTAGAAGGTGCAAAAGCGACAACAGAAACAGTTGATGCATTGAGAACTGGAGCAGCTGCAATGAAGTCAATGCATAAAGCAACAAACATCGATGACGTGGACAAGACAATGGATGAAATAAATGAGCAGACGGAGAACATGAAGCAGATACAAGAGGCATTGGCTACTCCAATCGGTGCAGCTGCTGATTTTGACGAGGATGAACTAGAGGCAGAACTTGAAGAACTGGAAGGTGCTGAGTTGGAGGATGAACTTCTTCAGCCGGCAACTACTACTCCAGCCGCGGCAGCTCCGGTGCCAGTTCCGGCAGGCAGGCAACCGGCTCGTCCTGCACCTCAAAAGCGCACAGCAGAGGAAGATGAACTCGCTGCATTGCAGGCAGAAATGGCACTTTGA

Network for GWHGAAZE025738

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03357.22	Snf7	1	157	2.70E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12194	CHMP4, SNF7, VPS32	Endocytosis	map04144
K12194	CHMP4, SNF7, VPS32	Necroptosis	map04217

Gene Ontology

GO term	Ontology	Name
GO:0007034	biological_process	vacuolar transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.918
	SRR3591706	second leaf	46.203
	SRR3591707	mature leaf	52.345
	SRR3591708	Shoot apex	54.634
	SRR3591709	Stem	77.671
	SRR3591710	White floral bud	126.525
	SRR3591711	White flower	208.883
	SRR3591712	Green floral bud	75.079
	SRR3591713	Yellow flower	200.674
SRP173429	SRR8316895	Juvenile bud stage	44.974
	SRR8316896	Juvenile bud stage	56.871
	SRR8316897	Juvenile bud stage	27.065
	SRR8316894	Third green stage	22.204
	SRR8316900	Third green stage	56.582
	SRR8316901	Third green stage	59.306
	SRR8316898	Complete white stage	53.449
	SRR8316899	Complete white stage	78.359
	SRR8316903	Complete white stage	87.684
	SRR8316902	Silver flowering stage	83.081
	SRR8316904	Silver flowering stage	97.348
	SRR8316905	Silver flowering stage	50.538
	SRR8316906	Gold flowering stage	168.794
	SRR8316907	Gold flowering stage	155.429
	SRR8316908	Gold flowering stage	172.973
SRP132670	SRR6706286	Control	74.415
	SRR6706287	Light intensity 50%	67.540
	SRR6706288	Light intensity 20%	65.676
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	52.570
	CNS0095593	Slightly white alabastrum(diploid) 2	46.121
	CNS0095594	Slightly white alabastrum(diploid) 3	53.843
	CNS0095595	Whole white alabastrum(diploid) 2	50.775
	CNS0095596	Whole white alabastrum(diploid) 3	39.213
	CNS0095597	Whole white alabastrum(diploid) 4	39.452
	CNS0095598	Silvery flower (diploied) 1	68.048
	CNS0095599	Silvery flower (diploied) 2	75.908
	CNS0095600	Silvery flower (diploied) 3	148.917
	CNS0095601	Golden flower (diploid) 1	75.741
	CNS0095602	Golden flower (diploid) 2	127.903
	CNS0095603	Golden flower (diploid) 3	127.297
	CNS0095604	Slightly white alabastrum(tetraploid) 1	54.700
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.713
	CNS0095606	Slightly white alabastrum(tetraploid) 3	78.135
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.155
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.885
	CNS0095609	Whole white alabastrum(tetraploid) 3	60.617
	CNS0095610	Silvery flower (tetraploid) 1	176.512
	CNS0095611	Silvery flower (tetraploid) 2	149.251
	CNS0095612	Silvery flower (tetraploid) 3	178.246
	CNS0095613	Golden flower (tetraploid) 1	173.919
	CNS0095614	Golden flower (tetraploid) 2	179.743
	CNS0095615	Golden flower (tetraploid) 3	217.416
CRA001975	CRR073297	Stem 1	66.828
	CRR073298	Stem 2	57.121
	CRR073299	Stem 3	67.786
	CRR073300	Leaf 1	51.905
	CRR073301	Leaf 2	56.206
	CRR073302	Leaf 3	44.615
	CRR073303	Juvenile bud 1	64.062
	CRR073304	Juvenile bud 2	54.200
	CRR073305	Juvenile bud 3	59.244
	CRR073306	Third green 1	123.329
	CRR073307	Third green 2	107.717
	CRR073308	Third green 3	97.698
	CRR073309	Second white 1	87.457
	CRR073310	Second white 2	139.268
	CRR073311	Second white 3	105.312
	CRR073312	Silver flowering 1	108.280
	CRR073313	Silver flowering 2	99.368
	CRR073314	Silver flowering 3	122.024
	CRR073315	Gold flowering 1	31.390
	CRR073316	Gold flowering 2	50.510
	CRR073317	Gold flowering 3	17.054
	CRR073318	Tawny withering 1	55.945
	CRR073319	Tawny withering 2	61.970
	CRR073320	Tawny withering 3	51.766