Gene detail

Detail information of GWHGAAZE025736

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009608132.1	2.328E-148	PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9M0G2\|C3H49_ARATH	3E-124	Zinc finger CCCH domain-containing protein 49
trEMBL	tr\|F6HGX4\|F6HGX4_VITVI	8E-145	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51472.1}
TAIR10	AT4G29190.1	1E-99	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67019700	67020943	+
GWHAAZE00000007	mRNA	67019700	67020943	+
GWHAAZE00000007	exon	67019700	67019948	+
GWHAAZE00000007	exon	67020200	67020943	+
GWHAAZE00000007	CDS	67019700	67019948	+
GWHAAZE00000007	CDS	67020200	67020943	+

Transcript Sequence
>GWHTAAZE025770 ATGATGATCGGAAACCACCCGAATTCAACGGTTCATGTCCCTCCATGGGATTTTCCTGATGATCTAGCGGCGGGTATGCCGCTATCTCTTAGCCTCAATAACTCCAATGCTAACTTCAATGTCGACGATTTCTCTCCCTTCCTCCAAAACTGCTCTCTATCTCCTATACAAGATCCTGACTCTGATGAGGACGCTGATCTTCCAGTCGACACGTACGCATGCGATCATTTCCGCATGTTTGAGTTCAAGGTGCGAAAGTGTGCACGTGGCAGGTCACACGACTGGACGGACTGTCCTTACGCCCATCCCGGTGAGAAGGCCCGCCGGAGGGACCCGAGGAAGTACCACTACTCCGGCACGGCTTGCCCTGAGTTTCGTAAGGGATACTGCAAAAAAGGTGACACCTGTGAGTTCGCACACGGCGTATTTGAGTGCTGGCTACACCCGTCCCGCTATCGTACCCAGCCTTGTAAAGACGGTGTTAACTGCACCAGGCGCGTCTGTTTCTTCGCGCACACTCCTGAGCAGCTTCGGGTTCTGAGCCCGAGGACCCCGGAATCGGCCGACTCGTTTGACTCGTCGCCACCGGTTTCCCCGGCAACGAACTCTTTGAGTCGATCGGTTGGTTCCACCTCTGTGAACGAAATGATTAATTCACTGCGTCAGCTACAGCTTAATAAGGTGAAATCAATGCCCAAATCTTGGGGTTTGCAAATGGGTTTTGGATCTCCGAGATTTTCTATGACCCGACCCGGATTCTGCAGCCTTCCCTCGACTCCGACTCGGGCCGTGACCCGGACGGGTATCGGTTACGATGAAATTTGGGAGAGTGAGGAGCCTGTTATGGAGAGGGTTGAGTCAGGTAGGGATTTGAGGGTAAGAATGTTTGAGAAGCTGTGTAAGGAGAATCCGCTAGACCGGGTCGACCCGGATCCGAATTCATCGGATGGTTCGAATCCGGATATAAATTGGGTTTCAGATCTGGTAAAATGA

Network for GWHGAAZE025736

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	121	141	1.30E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.610
	SRR3591706	second leaf	11.999
	SRR3591707	mature leaf	77.331
	SRR3591708	Shoot apex	17.781
	SRR3591709	Stem	8.776
	SRR3591710	White floral bud	2.798
	SRR3591711	White flower	6.778
	SRR3591712	Green floral bud	0.926
	SRR3591713	Yellow flower	0.728
SRP173429	SRR8316895	Juvenile bud stage	3.717
	SRR8316896	Juvenile bud stage	2.576
	SRR8316897	Juvenile bud stage	0.613
	SRR8316894	Third green stage	1.021
	SRR8316900	Third green stage	0.518
	SRR8316901	Third green stage	0.308
	SRR8316898	Complete white stage	0.258
	SRR8316899	Complete white stage	1.750
	SRR8316903	Complete white stage	1.607
	SRR8316902	Silver flowering stage	0.412
	SRR8316904	Silver flowering stage	0.887
	SRR8316905	Silver flowering stage	0.343
	SRR8316906	Gold flowering stage	0.644
	SRR8316907	Gold flowering stage	1.658
	SRR8316908	Gold flowering stage	0.838
SRP132670	SRR6706286	Control	1.393
	SRR6706287	Light intensity 50%	1.547
	SRR6706288	Light intensity 20%	1.283
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.482
	CNS0095593	Slightly white alabastrum(diploid) 2	1.885
	CNS0095594	Slightly white alabastrum(diploid) 3	1.239
	CNS0095595	Whole white alabastrum(diploid) 2	0.759
	CNS0095596	Whole white alabastrum(diploid) 3	0.255
	CNS0095597	Whole white alabastrum(diploid) 4	1.149
	CNS0095598	Silvery flower (diploied) 1	20.244
	CNS0095599	Silvery flower (diploied) 2	8.859
	CNS0095600	Silvery flower (diploied) 3	3.116
	CNS0095601	Golden flower (diploid) 1	15.673
	CNS0095602	Golden flower (diploid) 2	15.446
	CNS0095603	Golden flower (diploid) 3	13.617
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.297
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.455
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.953
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.490
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.396
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.061
	CNS0095610	Silvery flower (tetraploid) 1	5.650
	CNS0095611	Silvery flower (tetraploid) 2	14.070
	CNS0095612	Silvery flower (tetraploid) 3	2.407
	CNS0095613	Golden flower (tetraploid) 1	1.192
	CNS0095614	Golden flower (tetraploid) 2	7.773
	CNS0095615	Golden flower (tetraploid) 3	1.401
CRA001975	CRR073297	Stem 1	12.415
	CRR073298	Stem 2	10.935
	CRR073299	Stem 3	7.787
	CRR073300	Leaf 1	1.116
	CRR073301	Leaf 2	3.240
	CRR073302	Leaf 3	1.165
	CRR073303	Juvenile bud 1	0.553
	CRR073304	Juvenile bud 2	0.445
	CRR073305	Juvenile bud 3	0.392
	CRR073306	Third green 1	11.882
	CRR073307	Third green 2	4.096
	CRR073308	Third green 3	8.428
	CRR073309	Second white 1	5.637
	CRR073310	Second white 2	6.817
	CRR073311	Second white 3	3.473
	CRR073312	Silver flowering 1	2.702
	CRR073313	Silver flowering 2	2.750
	CRR073314	Silver flowering 3	3.825
	CRR073315	Gold flowering 1	25.819
	CRR073316	Gold flowering 2	47.133
	CRR073317	Gold flowering 3	36.877
	CRR073318	Tawny withering 1	10.413
	CRR073319	Tawny withering 2	4.627
	CRR073320	Tawny withering 3	6.032