Gene detail

Detail information of GWHGAAZE025729

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656246.1	0	PREDICTED: NAC domain-containing protein 8 isoform X3 [Vitis vinifera]
Swissprot	tr\|Q6NQK2\|NAC8_ARATH	2E-57	NAC domain-containing protein 8
trEMBL	tr\|A5BJQ5\|A5BJQ5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN61437.1}
TAIR10	AT4G29230.1	4E-104	NAC domain containing protein 75

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	66850028	66852799	-
GWHAAZE00000007	mRNA	66850028	66852799	-
GWHAAZE00000007	exon	66850028	66850039	-
GWHAAZE00000007	exon	66850405	66850722	-
GWHAAZE00000007	exon	66851343	66851941	-
GWHAAZE00000007	exon	66852341	66852491	-
GWHAAZE00000007	exon	66852677	66852799	-
GWHAAZE00000007	CDS	66852677	66852799	-
GWHAAZE00000007	CDS	66852341	66852491	-
GWHAAZE00000007	CDS	66851343	66851941	-
GWHAAZE00000007	CDS	66850405	66850722	-
GWHAAZE00000007	CDS	66850028	66850039	-

Transcript Sequence
>GWHTAAZE025763 ATGAATACGAATCAGTTGGGGTCAATAAGCAGCTCTGATCTAATTGATGCGAAGCTCGAAGAGCATCAATTTTGTGCATCCAAACACTGCCCTGGTTGCGGACACAAGCTGGAAGGCAAGCCGGACTGGGTAGGTCTACCAGCAGGAGTGAAATTTGACCCAACAGACCAAGAATTGATAGAACACCTTGAGGCAAAAGTTGAAGCCAAACAGTACTCTTCTAAATCTCACCCTTTGATTGATGAGTTCATCCCTACTATTGAAGGTGAAGATGGTGTTACAAGAGATGGATTAAGTAGACACTTCTTCCACAGACCATCAAAAGCTTACACAACTGGTACAAGAAAGAGAAGAAAAATTCAAACCGAATGCGATCTACAAGGCGGTGAGACAAGGTGGCACAAGACCGGCAAGACTAGGCCGGTAATGGTCAACGGTAAGCAAAAGGGGTGCAAGAAAATACTGGTTTTGTACACAAACTTTGGGAAGAATCGGAAACCCGAAAAGACCAATTGGGTGATGCACCAATACCACTTAGGCCAGAACGAGGAAGAGAGAGAAGGAGAACTCGTGGTTTCAAAGATATTTTATCAGACTCAGCCAAGACAGTGCAATTGGTCGGAGAGGAATACACAAGCCACAGCAGCTACCACTGTTGTCGTTGCCCCCGGAGAGATAAATAATGAGCCGAGTAGTAGGAGAGATAGTGGGAGTGGGAGTTGTAGTTCTTCTAAGGAAATAATCGCGCAGAGAGATGAATTTTCTGGTGTTACTGCTAATGCCGGTGTTATATCGAGTTATGGTGGTATGGATCTTCAACAATTTAAAGCTGACCATTTCGGCTTTACCCCATTCAGGAAAACCTTTGAAGAGGTGGGAACAGGAGGAGGGGAAGCTTCAACAGCAAGGGAGGGACATGTGGCAGGCACGTGCGAGGCTGGTGACCTCCAAAGGCCACATCACATGACCAGCACTAGTAGTGCTCTCCAACTCCAACATGAGAATCCACATCAGCAGCCACATCATCACCAGATTTCAACAGCCTACCACGTCAGCAGGCCCTCACACTCCATATCAGCCATAGTACTGTCCCCACCACCCCCTCCCCTACATCACACCTCCATCATTCTTGATGACGACTCCTTCCATGTCTCCAGATTAATGCTCCAAAATGAGAACCTAAATTTTCCGGTTGCTCTTTAA

Network for GWHGAAZE025729

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	47	179	1.60E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.040
	SRR3591706	second leaf	1.667
	SRR3591707	mature leaf	0.900
	SRR3591708	Shoot apex	4.487
	SRR3591709	Stem	7.010
	SRR3591710	White floral bud	2.384
	SRR3591711	White flower	2.506
	SRR3591712	Green floral bud	3.648
	SRR3591713	Yellow flower	0.975
SRP173429	SRR8316895	Juvenile bud stage	1.285
	SRR8316896	Juvenile bud stage	1.523
	SRR8316897	Juvenile bud stage	0.931
	SRR8316894	Third green stage	1.272
	SRR8316900	Third green stage	1.511
	SRR8316901	Third green stage	2.055
	SRR8316898	Complete white stage	1.121
	SRR8316899	Complete white stage	3.180
	SRR8316903	Complete white stage	2.218
	SRR8316902	Silver flowering stage	1.098
	SRR8316904	Silver flowering stage	1.942
	SRR8316905	Silver flowering stage	0.538
	SRR8316906	Gold flowering stage	2.037
	SRR8316907	Gold flowering stage	2.663
	SRR8316908	Gold flowering stage	1.497
SRP132670	SRR6706286	Control	1.468
	SRR6706287	Light intensity 50%	1.315
	SRR6706288	Light intensity 20%	1.275
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.193
	CNS0095593	Slightly white alabastrum(diploid) 2	5.430
	CNS0095594	Slightly white alabastrum(diploid) 3	2.863
	CNS0095595	Whole white alabastrum(diploid) 2	2.438
	CNS0095596	Whole white alabastrum(diploid) 3	1.617
	CNS0095597	Whole white alabastrum(diploid) 4	3.551
	CNS0095598	Silvery flower (diploied) 1	1.361
	CNS0095599	Silvery flower (diploied) 2	2.239
	CNS0095600	Silvery flower (diploied) 3	1.441
	CNS0095601	Golden flower (diploid) 1	0.716
	CNS0095602	Golden flower (diploid) 2	0.520
	CNS0095603	Golden flower (diploid) 3	0.434
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.107
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.523
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.458
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.705
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.575
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.393
	CNS0095610	Silvery flower (tetraploid) 1	1.189
	CNS0095611	Silvery flower (tetraploid) 2	0.373
	CNS0095612	Silvery flower (tetraploid) 3	0.695
	CNS0095613	Golden flower (tetraploid) 1	1.664
	CNS0095614	Golden flower (tetraploid) 2	1.197
	CNS0095615	Golden flower (tetraploid) 3	0.446
CRA001975	CRR073297	Stem 1	1.675
	CRR073298	Stem 2	2.629
	CRR073299	Stem 3	2.318
	CRR073300	Leaf 1	2.732
	CRR073301	Leaf 2	2.411
	CRR073302	Leaf 3	0.969
	CRR073303	Juvenile bud 1	2.291
	CRR073304	Juvenile bud 2	1.094
	CRR073305	Juvenile bud 3	3.613
	CRR073306	Third green 1	0.680
	CRR073307	Third green 2	0.550
	CRR073308	Third green 3	0.833
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.299
	CRR073311	Second white 3	0.309
	CRR073312	Silver flowering 1	0.273
	CRR073313	Silver flowering 2	0.143
	CRR073314	Silver flowering 3	0.649
	CRR073315	Gold flowering 1	1.036
	CRR073316	Gold flowering 2	1.009
	CRR073317	Gold flowering 3	0.406
	CRR073318	Tawny withering 1	8.778
	CRR073319	Tawny withering 2	6.721
	CRR073320	Tawny withering 3	12.255