Detail information of GWHGAAZE025722


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADL18409.16.89317E-84profilin [Gossypium hirsutum]
Swissprottr|O82572|PROF1_RICCO2E-84Profilin-1
trEMBLtr|E0XJL2|E0XJL2_GOSHI3E-84Profilin {ECO:0000256|RuleBase:RU003909}
TAIR10AT5G56600.11E-47profilin 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6676686266770433-
GWHAAZE00000007mRNA6676686266770433-
GWHAAZE00000007exon6677031166770433-
GWHAAZE00000007exon6676847066768607-
GWHAAZE00000007exon6676737466767525-
GWHAAZE00000007exon6676686266767288-
GWHAAZE00000007CDS6677031166770433-
GWHAAZE00000007CDS6676847066768607-
GWHAAZE00000007CDS6676739166767525-
GWHAAZE00000007three_prime_UTR6676737466767390-
GWHAAZE00000007three_prime_UTR6676686266767288-
Transcript Sequence

Network for GWHGAAZE025722

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00235.20Profilin11308.20E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05759PFN Rap1 signaling pathway map04015
MAPK signaling pathway - flymap04013
Regulation of actin cytoskeletonmap04810

Gene Ontology

GO term OntologyName
GO:0003779molecular_functionactin binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf405.369
SRR3591706second leaf135.870
SRR3591707mature leaf133.060
SRR3591708Shoot apex187.302
SRR3591709Stem346.777
SRR3591710White floral bud736.211
SRR3591711White flower441.869
SRR3591712Green floral bud326.355
SRR3591713Yellow flower254.103
SRP173429 SRR8316895Juvenile bud stage 113.415
SRR8316896Juvenile bud stage 160.876
SRR8316897Juvenile bud stage 94.254
SRR8316894Third green stage 101.507
SRR8316900Third green stage 370.566
SRR8316901Third green stage 355.968
SRR8316898Complete white stage 498.604
SRR8316899Complete white stage 637.159
SRR8316903Complete white stage 747.763
SRR8316902Silver flowering stage310.902
SRR8316904Silver flowering stage412.919
SRR8316905Silver flowering stage239.827
SRR8316906Gold flowering stage 437.040
SRR8316907Gold flowering stage 446.204
SRR8316908Gold flowering stage 431.459
SRP132670SRR6706286Control625.549
SRR6706287Light intensity 50%686.439
SRR6706288Light intensity 20%741.120
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1226.059
CNS0095593Slightly white alabastrum(diploid) 2310.509
CNS0095594Slightly white alabastrum(diploid) 3198.088
CNS0095595Whole white alabastrum(diploid) 2292.028
CNS0095596Whole white alabastrum(diploid) 3292.638
CNS0095597Whole white alabastrum(diploid) 4317.847
CNS0095598Silvery flower (diploied) 1252.300
CNS0095599Silvery flower (diploied) 2277.883
CNS0095600Silvery flower (diploied) 3452.353
CNS0095601Golden flower (diploid) 1194.477
CNS0095602Golden flower (diploid) 2280.738
CNS0095603Golden flower (diploid) 3265.092
CNS0095604Slightly white alabastrum(tetraploid) 1233.098
CNS0095605Slightly white alabastrum(tetraploid) 2210.686
CNS0095606Slightly white alabastrum(tetraploid) 3340.287
CNS0095607Whole white alabastrum(tetraploid) 1219.352
CNS0095608Whole white alabastrum(tetraploid) 2264.714
CNS0095609Whole white alabastrum(tetraploid) 3269.155
CNS0095610Silvery flower (tetraploid) 1381.331
CNS0095611Silvery flower (tetraploid) 2349.877
CNS0095612Silvery flower (tetraploid) 3309.681
CNS0095613Golden flower (tetraploid) 1239.723
CNS0095614Golden flower (tetraploid) 2254.353
CNS0095615Golden flower (tetraploid) 3246.472
CRA001975CRR073297Stem 1198.979
CRR073298Stem 2228.377
CRR073299Stem 3215.420
CRR073300Leaf 1386.199
CRR073301Leaf 2396.756
CRR073302Leaf 3423.365
CRR073303Juvenile bud 1530.759
CRR073304Juvenile bud 2551.066
CRR073305Juvenile bud 3401.317
CRR073306Third green 1599.514
CRR073307Third green 2918.490
CRR073308Third green 3618.458
CRR073309Second white 1371.398
CRR073310Second white 2243.543
CRR073311Second white 3141.721
CRR073312Silver flowering 1147.303
CRR073313Silver flowering 2205.200
CRR073314Silver flowering 3137.490
CRR073315Gold flowering 1143.866
CRR073316Gold flowering 2139.066
CRR073317Gold flowering 3134.434
CRR073318Tawny withering 1274.288
CRR073319Tawny withering 2222.369
CRR073320Tawny withering 3307.032