Detail information of GWHGAAZE025720


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009800646.10PREDICTED: mitogen-activated protein kinase kinase 6 isoform X1 [Nicotiana sylvestris]
COGYP_003523895.12E-28serine/threonine protein kinase
Swissprottr|Q9FJV0|M2K6_ARATH0Mitogen-activated protein kinase kinase 6
trEMBLtr|Q9AYN9|Q9AYN9_TOBAC0NQK1 MAPKK {ECO:0000313|EMBL:BAB32405.1}
TAIR10AT5G56580.12E-162MAP kinase kinase 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6674847066757330-
GWHAAZE00000007mRNA6674847066757330-
GWHAAZE00000007exon6674847066748759-
GWHAAZE00000007exon6674901366749058-
GWHAAZE00000007exon6675141066751633-
GWHAAZE00000007exon6675222466752406-
GWHAAZE00000007exon6675253266752756-
GWHAAZE00000007exon6675443766754568-
GWHAAZE00000007exon6675634666756430-
GWHAAZE00000007exon6675725766757330-
GWHAAZE00000007CDS6675725766757330-
GWHAAZE00000007CDS6675634666756430-
GWHAAZE00000007CDS6675443766754568-
GWHAAZE00000007CDS6675253266752756-
GWHAAZE00000007CDS6675222466752406-
GWHAAZE00000007CDS6675141066751633-
GWHAAZE00000007CDS6674901366749058-
GWHAAZE00000007CDS6674866766748759-
GWHAAZE00000007three_prime_UTR6674847066748666-
Transcript Sequence

Network for GWHGAAZE025720

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase693282.80E-66
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilySTE_STE7

KEGG pathway

KO Enzyme pathway mapID
K04368MAP2K1, MEK1 Ras signaling pathway map04014
Rap1 signaling pathwaymap04015
MAPK signaling pathwaymap04010
MAPK signaling pathway - flymap04013
ErbB signaling pathwaymap04012
VEGF signaling pathwaymap04370
Apelin signaling pathwaymap04371
TNF signaling pathwaymap04668
HIF-1 signaling pathwaymap04066
FoxO signaling pathwaymap04068
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
cGMP-PKG signaling pathwaymap04022
PI3K-Akt signaling pathwaymap04151
mTOR signaling pathwaymap04150
Autophagy - animalmap04140
Oocyte meiosismap04114
Apoptosismap04210
Cellular senescencemap04218
Focal adhesionmap04510
Gap junctionmap04540
Signaling pathways regulating pluripotency of stem cellsmap04550
Regulation of actin cytoskeletonmap04810
Toll-like receptor signaling pathwaymap04620
Natural killer cell mediated cytotoxicitymap04650
T cell receptor signaling pathwaymap04660
B cell receptor signaling pathwaymap04662
Fc epsilon RI signaling pathwaymap04664
Fc gamma R-mediated phagocytosismap04666
Chemokine signaling pathwaymap04062
Insulin signaling pathwaymap04910
GnRH secretionmap04929
GnRH signaling pathwaymap04912
Estrogen signaling pathwaymap04915
Progesterone-mediated oocyte maturationmap04914
Prolactin signaling pathwaymap04917
Oxytocin signaling pathwaymap04921
Relaxin signaling pathwaymap04926
Growth hormone synthesis, secretion and actionmap04935
Thyroid hormone signaling pathwaymap04919
Parathyroid hormone synthesis, secretion and actionmap04928
Melanogenesismap04916
Vascular smooth muscle contractionmap04270
Cholinergic synapsemap04725
Serotonergic synapsemap04726
Long-term potentiationmap04720
Long-term depressionmap04730
Neurotrophin signaling pathwaymap04722
Dorso-ventral axis formationmap04320
Osteoclast differentiationmap04380
Plant-pathogen interactionmap04626

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.547
SRR3591706second leaf1.596
SRR3591707mature leaf0.673
SRR3591708Shoot apex11.907
SRR3591709Stem4.386
SRR3591710White floral bud2.061
SRR3591711White flower2.486
SRR3591712Green floral bud4.873
SRR3591713Yellow flower3.416
SRP173429 SRR8316895Juvenile bud stage 4.557
SRR8316896Juvenile bud stage 5.153
SRR8316897Juvenile bud stage 2.095
SRR8316894Third green stage 2.135
SRR8316900Third green stage 5.844
SRR8316901Third green stage 5.089
SRR8316898Complete white stage 1.292
SRR8316899Complete white stage 6.036
SRR8316903Complete white stage 2.207
SRR8316902Silver flowering stage0.608
SRR8316904Silver flowering stage1.418
SRR8316905Silver flowering stage0.153
SRR8316906Gold flowering stage 2.089
SRR8316907Gold flowering stage 1.364
SRR8316908Gold flowering stage 1.315
SRP132670SRR6706286Control2.231
SRR6706287Light intensity 50%3.537
SRR6706288Light intensity 20%3.728
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.516
CNS0095593Slightly white alabastrum(diploid) 28.313
CNS0095594Slightly white alabastrum(diploid) 35.014
CNS0095595Whole white alabastrum(diploid) 23.840
CNS0095596Whole white alabastrum(diploid) 33.929
CNS0095597Whole white alabastrum(diploid) 43.716
CNS0095598Silvery flower (diploied) 16.280
CNS0095599Silvery flower (diploied) 24.540
CNS0095600Silvery flower (diploied) 33.536
CNS0095601Golden flower (diploid) 11.990
CNS0095602Golden flower (diploid) 22.079
CNS0095603Golden flower (diploid) 33.254
CNS0095604Slightly white alabastrum(tetraploid) 15.348
CNS0095605Slightly white alabastrum(tetraploid) 24.386
CNS0095606Slightly white alabastrum(tetraploid) 37.686
CNS0095607Whole white alabastrum(tetraploid) 12.950
CNS0095608Whole white alabastrum(tetraploid) 21.477
CNS0095609Whole white alabastrum(tetraploid) 33.636
CNS0095610Silvery flower (tetraploid) 13.459
CNS0095611Silvery flower (tetraploid) 24.058
CNS0095612Silvery flower (tetraploid) 32.717
CNS0095613Golden flower (tetraploid) 11.608
CNS0095614Golden flower (tetraploid) 22.539
CNS0095615Golden flower (tetraploid) 31.160
CRA001975CRR073297Stem 13.787
CRR073298Stem 23.762
CRR073299Stem 35.124
CRR073300Leaf 14.177
CRR073301Leaf 25.180
CRR073302Leaf 33.348
CRR073303Juvenile bud 14.684
CRR073304Juvenile bud 23.030
CRR073305Juvenile bud 34.563
CRR073306Third green 10.718
CRR073307Third green 20.666
CRR073308Third green 30.613
CRR073309Second white 11.116
CRR073310Second white 20.861
CRR073311Second white 30.753
CRR073312Silver flowering 11.316
CRR073313Silver flowering 20.549
CRR073314Silver flowering 30.525
CRR073315Gold flowering 11.867
CRR073316Gold flowering 21.407
CRR073317Gold flowering 30.917
CRR073318Tawny withering 18.369
CRR073319Tawny withering 28.938
CRR073320Tawny withering 310.424