Gene detail

Detail information of GWHGAAZE025708

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002514211.1	0	multidrug resistance protein 1, 2, putative [Ricinus communis]
COG	YP_629357.1	9E-104	ABC transporter permease
Swissprot	tr\|Q9LHK4\|AB8B_ARATH	0	Putative ABC transporter B family member 8
trEMBL	tr\|B9RKG7\|B9RKG7_RICCO	0	Multidrug resistance protein 1, 2, putative {ECO:0000313\|EMBL:EEF48165.1}
TAIR10	AT3G28345.1	0	ABC transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	66481644	66488670	-
GWHAAZE00000007	mRNA	66481644	66488670	-
GWHAAZE00000007	exon	66481644	66482069	-
GWHAAZE00000007	exon	66482420	66483703	-
GWHAAZE00000007	exon	66483816	66483995	-
GWHAAZE00000007	exon	66484561	66485149	-
GWHAAZE00000007	exon	66486353	66486810	-
GWHAAZE00000007	exon	66487488	66487666	-
GWHAAZE00000007	exon	66488251	66488305	-
GWHAAZE00000007	exon	66488425	66488670	-
GWHAAZE00000007	CDS	66488425	66488670	-
GWHAAZE00000007	CDS	66488251	66488305	-
GWHAAZE00000007	CDS	66487488	66487666	-
GWHAAZE00000007	CDS	66486353	66486810	-
GWHAAZE00000007	CDS	66484561	66485149	-
GWHAAZE00000007	CDS	66483816	66483995	-
GWHAAZE00000007	CDS	66482420	66483703	-
GWHAAZE00000007	CDS	66481644	66482069	-

Transcript Sequence
>GWHTAAZE025742 ATGAGTTCTTCATCGAAAAATGGCGAGATGGAGATGAACAAGGAGAAGAATAAATCCTCAATAGGCATAATATTCAGATACGCTGATTGGACTGACATTACACTAATGATAATGGGGACCTTAGGAGCCATTGGTGATGGCATGTCCACAAACTGTTTGTTGGTATATGTTAGCCATCTTTTTAATAGCTTGGGTTATGGTAAAACTCAAAACAATCATGCCAATTTCATGCTTGAGGTTGAAAAGTGCAGTTTATACTTTGTGTACTTGGGATTGGCAGTAATGGTGGCTGCTTTTATGGAAGGTTATTGTTGGAGTAAAACAAGTGAAAGACAAGTGTTAAAGATAAGGTACAAGTATTTGGAAGCTGTGCTTAGGCAAGAAGTTGGATTCTTTGATTCACAAGAAGCAACAACTTCAGAGATCACTAATAGTATTTCTAAAGATACTTCCCTCATTCAAGAACTTCTTAGTGAGAAGGTACCAATATTTGTTATGCACACATCAGTCTTCGTCTCAGGCCTTGCATTTTCCACCTACTTCTCATGGAGATTGGCCTTAGTAGCCTTCCCAACACTACTTCTCCTAATAATACCAGGCCTAATTTATGGAAAATACCTTCTATTCTTGTCCAAAAAATCCTTCAAAGAATACTCTCTTGCAAATGGCATTATAGAACAAGCTCTTGTATCCATCAAGACTGTATATTCCTTCACGGCCGAGAGGAACATTATCGATAAATATTCAACCATTTTGGACCGAACCACGAAATTGGGAATCAAACAAGGCATTGCAAAAGGACTTGCTGTGGGTAGTACGGGGCTTTCTTTCGCCATCTGGGCTTTGCTCGCTTGGTACGGGAGCCGTTTGGTTATGTATAAAGGGGAAAGTGGAGGGAGAATATATGCAGCTGGCATTTCATTCGTCATGAGTGGGTTTTTTCATCTCTTAACAAAATTCTGCCAAAATATATACTTCAAAAACAGATCACTTGGAATGGCACTGCCTGAGGTGAAGTACTTCACAGAAGCCTCAGTTGCAGCCTCACGAATATTTCACAGGATAGACCGAGTCCCACAAATCGACAGTGAAGCAAAAGAAGGACTTGTATTGCAAAATATCCGAGGAGAACTTAAATTTGAGAGTGTGTTTTTCACGTACCCCTCGCGTCCAACTTGTACTGTCCTTAAAGATTTCAATCTCATGATCGAGGCCGGTAAAACAGTGGCCTTAGTGGGTGCAAGTGGGAGTGGAAAATCAACTGCAATTGCGTTGGTTCAAAGATTTTATGATGCTGATTGTGGAATTGTGAATATTGATGGTGTGGATATAAAGAAGTTGCAATTGAAATGGCTAAGGGAGCAAATGGGACTTGTTAGTCAAGAACATGCAATGTTTGGTACATCAATAAAAGAGAATATTTTGTTTGGGAAACTTGATGCAAGTATGGATGAAATTATAGCCGCCGCTACAGCTGCAAATGCTCATAATTTCATTAGGCAGCTTCCAGAAGGGTACGAGACTAAGGTTGGTGAACGCGGAGGGCTTTTATCAGGTGGACAAAAACAACGAATCGCCATTGCTCGAGCCATTATAAAGAACCCAGTGATTCTTTTGCTTGATGAAGCAACAAGTGCCCTTGACTCTGAATCTGAAAAACTAGTCCAAACTGCCCTTGACCAAGCTTCTATGGGAAGAACAACACTAGTGGTGGCCCACAAGCTCTCAACTATACGAAATGCTGATCTCATTGGAGTAATGAGCGGCGGCTCCATCATCGAACAAGGCTCACACAATGACCTCATCAACAAGATCAATGGTCACTATGCAAAGCTCGCAAAACTTCAAAGACAATTCACCATTGATGATCAAGAACACGTGGAGCCTGGTGTCATATCTTCGGTTGCAAGAAGCAGTGCCAGTAGAATAAGCACTGGCAAATCAAGCCCGGCTGTTTTTGCCTCACCGTCACCCATGGGTGATGCAAAACTTGTCACTTACCCCCCACCTTCCTTCTCAAGGCTTCTTGCTTTAAACTCACCCGAATGGAAACAAGGCCTAATTGGAAGCCTATCGGCTATAGCCTTTGGCGCGGTACAGCCCGTTTATGCACTAACCATAGGTGGCATGATCTCGGCCTTTTTCTCCCCGAGTCATCAAGAAATGAACGCTCGGATCCGCACATATTCCTTAATATTTTGCTCCCTCTCCTTAATTTCTATGATTGTGAACCTCTTTCAGCATTACAATTTTGCTTATATGGGCGAGAGGCTAACGAAAAGAATCAGATTGAGAATGCTAGAGAAGATCTTGACCTTTGAAACGGCTTGGTTCGACGAAGAACAGAACTCAAGTGGAGCGTTATGTTCAAGATTGAGCAATGAGGCCTCAATGGTTAAGTCCCTTGTAGCCGATAGAATCTCTCTTTTAGTTCAAGCCACTTCGGCAGTAACCATTGCTATGATCATGGGTCTAACTGTGGCTTGGAAGCTTGCACTTGTTATGATAGCTGTCCAACCCCTCTCAATCCTCTGTTTTTACACAAGAAAAGTACTACTTTCGGCTATTTCGGCTAAGTTTGTTAAGGCACAAAACCAAAGTACTCAAGTGGCTGTTGAGGCAGTGTATAACCATAGGATTGTGACCTCATTTGGAAGCATTAGTAAGGTTCTTGAGCTTTTTGACTCGGCTCAAGATAAGCCGAGGAGGGAAGCCAAGAAGAAGTCGTGGCTAGCTGGGGTTGGTATTGGCTCAGCTCAAGGGCTAACCTTCATTTGTTGGGCACTTGATTTTTGGTATGGTGGAAGGCTTGTTGATGCAGGTGAGATTTCAGCTGGGGATGTTTTCAAGACTTTCTTTATATTGGTTAGTACCGGAAAGGTGATAGCCGATGCCGGTAGTATGACGTCCGATCTAGCCAAGGGCTCAACCGCGGTTGCATCGGTTTTCTCAATTCTTGATAGGCAGTCACTCATTCCTGGCTCATACAATGGTGGGGATGGCACTAGTGGGAGTGGGACAAAGCTCGCGTGCATGACAGGTGGGATAGAAATGAAAAGGGTTGAGTTTGCATATCCAAACAGGCCCGAGAGTTTAGTTTTACAGGAATTTTGCTTGGAAGTGAAGGCGGGCACAAGCACTGGGCTCGTTGGGAAGAGTGGATGTGGCAAGTCAACGGTGATCGCATTGATACAGAGATTTTATGACGTGGAGAGAGGGACGATCAAGGTGGATGGTGTGGACATAAGGATGCTCGACATCGGGTGGTACCGTAACCACATGTCTCTCGTTAGCCAAGAACCGGTGCTTTACTCGGGCACCATTCGCGATAATATCGTCTTTGGGAAGCTCGACGCTTCGGAAAACGAGCTTGTGGAGGCGGCTAGGGCCGCCAATGCTCACGAATTCATCTCGTAA

Network for GWHGAAZE025708

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	55	313	1.10E-46
PF00005.28	ABC_tran	396	545	1.10E-30
PF00664.24	ABC_membrane	688	957	5.90E-52
PF00005.28	ABC_tran	1036	1127	4.80E-16

Protein Sequence

>GWHPAAZE025726
MSSSSKNGEMEMNKEKNKSSIGIIFRYADWTDITLMIMGTLGAIGDGMSTNCLLVYVSHLFNSLGYGKTQNNHANFMLEVEKCSLYFVYLGLAVMVAAFMEGYCWSKTSERQVLKIRYKYLEAVLRQEVGFFDSQEATTSEITNSISKDTSLIQELLSEKVPIFVMHTSVFVSGLAFSTYFSWRLALVAFPTLLLLIIPGLIYGKYLLFLSKKSFKEYSLANGIIEQALVSIKTVYSFTAERNIIDKYSTILDRTTKLGIKQGIAKGLAVGSTGLSFAIWALLAWYGSRLVMYKGESGGRIYAAGISFVMSGFFHLLTKFCQNIYFKNRSLGMALPEVKYFTEASVAASRIFHRIDRVPQIDSEAKEGLVLQNIRGELKFESVFFTYPSRPTCTVLKDFNLMIEAGKTVALVGASGSGKSTAIALVQRFYDADCGIVNIDGVDIKKLQLKWLREQMGLVSQEHAMFGTSIKENILFGKLDASMDEIIAAATAANAHNFIRQLPEGYETKVGERGGLLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESEKLVQTALDQASMGRTTLVVAHKLSTIRNADLIGVMSGGSIIEQGSHNDLINKINGHYAKLAKLQRQFTIDDQEHVEPGVISSVARSSASRISTGKSSPAVFASPSPMGDAKLVTYPPPSFSRLLALNSPEWKQGLIGSLSAIAFGAVQPVYALTIGGMISAFFSPSHQEMNARIRTYSLIFCSLSLISMIVNLFQHYNFAYMGERLTKRIRLRMLEKILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRISLLVQATSAVTIAMIMGLTVAWKLALVMIAVQPLSILCFYTRKVLLSAISAKFVKAQNQSTQVAVEAVYNHRIVTSFGSISKVLELFDSAQDKPRREAKKKSWLAGVGIGSAQGLTFICWALDFWYGGRLVDAGEISAGDVFKTFFILVSTGKVIADAGSMTSDLAKGSTAVASVFSILDRQSLIPGSYNGGDGTSGSGTKLACMTGGIEMKRVEFAYPNRPESLVLQEFCLEVKAGTSTGLVGKSGCGKSTVIALIQRFYDVERGTIKVDGVDIRMLDIGWYRNHMSLVSQEPVLYSGTIRDNIVFGKLDASENELVEAARAANAHEFIS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.525
	SRR3591706	second leaf	0.440
	SRR3591707	mature leaf	5.324
	SRR3591708	Shoot apex	0.401
	SRR3591709	Stem	3.980
	SRR3591710	White floral bud	33.526
	SRR3591711	White flower	13.344
	SRR3591712	Green floral bud	62.965
	SRR3591713	Yellow flower	17.644
SRP173429	SRR8316895	Juvenile bud stage	4.656
	SRR8316896	Juvenile bud stage	14.889
	SRR8316897	Juvenile bud stage	6.473
	SRR8316894	Third green stage	17.819
	SRR8316900	Third green stage	81.615
	SRR8316901	Third green stage	64.511
	SRR8316898	Complete white stage	13.043
	SRR8316899	Complete white stage	97.956
	SRR8316903	Complete white stage	28.078
	SRR8316902	Silver flowering stage	4.091
	SRR8316904	Silver flowering stage	7.715
	SRR8316905	Silver flowering stage	3.131
	SRR8316906	Gold flowering stage	6.496
	SRR8316907	Gold flowering stage	8.074
	SRR8316908	Gold flowering stage	15.772
SRP132670	SRR6706286	Control	62.545
	SRR6706287	Light intensity 50%	68.522
	SRR6706288	Light intensity 20%	69.671
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.241
	CNS0095593	Slightly white alabastrum(diploid) 2	16.624
	CNS0095594	Slightly white alabastrum(diploid) 3	6.341
	CNS0095595	Whole white alabastrum(diploid) 2	17.082
	CNS0095596	Whole white alabastrum(diploid) 3	19.638
	CNS0095597	Whole white alabastrum(diploid) 4	14.437
	CNS0095598	Silvery flower (diploied) 1	3.708
	CNS0095599	Silvery flower (diploied) 2	3.838
	CNS0095600	Silvery flower (diploied) 3	20.825
	CNS0095601	Golden flower (diploid) 1	2.018
	CNS0095602	Golden flower (diploid) 2	30.805
	CNS0095603	Golden flower (diploid) 3	28.582
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.347
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.034
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.929
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.413
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.385
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.935
	CNS0095610	Silvery flower (tetraploid) 1	12.323
	CNS0095611	Silvery flower (tetraploid) 2	11.825
	CNS0095612	Silvery flower (tetraploid) 3	6.131
	CNS0095613	Golden flower (tetraploid) 1	3.055
	CNS0095614	Golden flower (tetraploid) 2	10.791
	CNS0095615	Golden flower (tetraploid) 3	5.880
CRA001975	CRR073297	Stem 1	19.158
	CRR073298	Stem 2	27.716
	CRR073299	Stem 3	20.449
	CRR073300	Leaf 1	173.916
	CRR073301	Leaf 2	103.649
	CRR073302	Leaf 3	102.047
	CRR073303	Juvenile bud 1	204.152
	CRR073304	Juvenile bud 2	81.690
	CRR073305	Juvenile bud 3	196.174
	CRR073306	Third green 1	8.644
	CRR073307	Third green 2	18.247
	CRR073308	Third green 3	23.010
	CRR073309	Second white 1	1.570
	CRR073310	Second white 2	2.335
	CRR073311	Second white 3	1.899
	CRR073312	Silver flowering 1	3.575
	CRR073313	Silver flowering 2	4.937
	CRR073314	Silver flowering 3	6.539
	CRR073315	Gold flowering 1	0.419
	CRR073316	Gold flowering 2	1.928
	CRR073317	Gold flowering 3	0.785
	CRR073318	Tawny withering 1	8.546
	CRR073319	Tawny withering 2	5.807
	CRR073320	Tawny withering 3	5.641