Gene detail

Detail information of GWHGAAZE025706

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280468.3	0	PREDICTED: probable protein phosphatase 2C 68 isoform X2 [Vitis vinifera]
COG	YP_003709340.1	1E-15	serine/threonine PP2C protein phosphatase
Swissprot	tr\|Q0JLP9\|P2C06_ORYSJ	8E-106	Probable protein phosphatase 2C 6
trEMBL	tr\|F6HGL2\|F6HGL2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51488.1}
TAIR10	AT4G26080.1	1E-83	Protein phosphatase 2C family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	66447790	66462019	+
GWHAAZE00000007	mRNA	66447790	66462019	+
GWHAAZE00000007	exon	66447790	66448263	+
GWHAAZE00000007	exon	66452302	66452589	+
GWHAAZE00000007	exon	66453476	66453581	+
GWHAAZE00000007	exon	66461715	66462019	+
GWHAAZE00000007	CDS	66447790	66448263	+
GWHAAZE00000007	CDS	66452302	66452589	+
GWHAAZE00000007	CDS	66453476	66453581	+
GWHAAZE00000007	CDS	66461715	66462019	+

Transcript Sequence
>GWHTAAZE025740 ATGGAGAATTATATTAAGACAAAAGACGATACTAATACTGATTTTCACCGAGTCGACTCGGACTTAGCTTCAACGAGTTCGACTATGTCCTCGATTTTTGGGAGTGAAGATGCTCCGTGCACGATAGGTGACACGCCAGCGACGAGCAGCAGCTCCGGCGAGATTCCGTCGGCTTTCGTGGCCGAGGTTGTTCTGACTCCGATGCTGGCTGAGGCTCCGGCAGCTGCGACTGCGACTGCGACGGTGGCTGCGAGAGTGAAGTGCGTGGGTAGGAACAGTCGGGGAGTGAGCTGGGGGTTCACGTCGGTGATCGGACGGCGGAAGGAGATGGAGGATGCCGTCACTGTCGCCCCGGGGTTCATGTCACGCACGTGCGATCACGTGGGTGGTTGTACGGCTCCAGGTTCGAGGAACTCGTGCGAGATCTCGCCCTTTCATTTCTTCGGTGTGTATGATGGTCACGGTGGCTCTCAGGTGGCTAAATTTTGTGCTGAGAGGATGCATGAAGTGATAGCAGAAGAGTGGGATAGAGAAATAGGAGATGGATTTGAATGGCAACAGAGGTGGGAAGCCGTTTTCTCTAGCAGTTTCGAGAGGACTGATAATGAGGCCCTAACAGAGGCGGCAGCACCGGAAATGGTTGGATCTACTGCAGTTGTGGTGGTTCTATCTGGTTGCCAAATCATCATATCTAATTGTGGCGACTCAAGGGCAGTCCTTTGCCGGGGGACAGAAACTATTCCCTTAACTGTTGATCAGAAGCCTGACAGAGAAGATGAACTCTTGAGAATTGAAGGACAGGGAGGGAAAGTCATTAACTGGAACGGTGCTAGGGTGTTTGGAGTTCTTGCCATGTCAAGAGCTATAGGTGATCGGTATTTGAGGCCATGGATTATTCCGGTTCCCGAGATAACTTTCATGACAAGGAGTGACGAGGACGAGTGTTTGATTTTAGCGAGTGATGGGCTTTGGGACGTAATGTCGAACCACGAGGTTGGTGAGGTGGCTCGCCGCCTTCTAAGGCGGCGGCGTAGGTCTATTACGACGGACGAGGAGATTCCTGCAGCACAAACTGTCGCTGAGAGTCTCACTGAAATAGCTGTTGGTAGAAATAGCTCTGATAACATCTCTATCATAGTTGTTGATCTAAAATCAAAGAGAAAGCGACAGTAA

Network for GWHGAAZE025706

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	102	376	1.60E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14497	PP2C	MAPK signaling pathway - plant	map04016
K14497	PP2C	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.251
	SRR3591706	second leaf	27.928
	SRR3591707	mature leaf	58.153
	SRR3591708	Shoot apex	24.542
	SRR3591709	Stem	30.919
	SRR3591710	White floral bud	20.483
	SRR3591711	White flower	25.810
	SRR3591712	Green floral bud	21.085
	SRR3591713	Yellow flower	28.194
SRP173429	SRR8316895	Juvenile bud stage	14.589
	SRR8316896	Juvenile bud stage	18.620
	SRR8316897	Juvenile bud stage	6.844
	SRR8316894	Third green stage	6.906
	SRR8316900	Third green stage	22.821
	SRR8316901	Third green stage	25.055
	SRR8316898	Complete white stage	15.250
	SRR8316899	Complete white stage	87.534
	SRR8316903	Complete white stage	20.545
	SRR8316902	Silver flowering stage	7.949
	SRR8316904	Silver flowering stage	8.058
	SRR8316905	Silver flowering stage	5.958
	SRR8316906	Gold flowering stage	13.868
	SRR8316907	Gold flowering stage	16.773
	SRR8316908	Gold flowering stage	15.406
SRP132670	SRR6706286	Control	41.592
	SRR6706287	Light intensity 50%	42.391
	SRR6706288	Light intensity 20%	46.323
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.970
	CNS0095593	Slightly white alabastrum(diploid) 2	11.337
	CNS0095594	Slightly white alabastrum(diploid) 3	11.708
	CNS0095595	Whole white alabastrum(diploid) 2	13.243
	CNS0095596	Whole white alabastrum(diploid) 3	7.519
	CNS0095597	Whole white alabastrum(diploid) 4	12.780
	CNS0095598	Silvery flower (diploied) 1	24.579
	CNS0095599	Silvery flower (diploied) 2	17.412
	CNS0095600	Silvery flower (diploied) 3	28.838
	CNS0095601	Golden flower (diploid) 1	27.253
	CNS0095602	Golden flower (diploid) 2	37.591
	CNS0095603	Golden flower (diploid) 3	34.380
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.130
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.403
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.283
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.362
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.653
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.460
	CNS0095610	Silvery flower (tetraploid) 1	30.040
	CNS0095611	Silvery flower (tetraploid) 2	30.093
	CNS0095612	Silvery flower (tetraploid) 3	4.538
	CNS0095613	Golden flower (tetraploid) 1	12.436
	CNS0095614	Golden flower (tetraploid) 2	19.947
	CNS0095615	Golden flower (tetraploid) 3	12.715
CRA001975	CRR073297	Stem 1	32.620
	CRR073298	Stem 2	36.859
	CRR073299	Stem 3	32.317
	CRR073300	Leaf 1	57.562
	CRR073301	Leaf 2	48.773
	CRR073302	Leaf 3	38.978
	CRR073303	Juvenile bud 1	54.327
	CRR073304	Juvenile bud 2	54.242
	CRR073305	Juvenile bud 3	54.150
	CRR073306	Third green 1	6.329
	CRR073307	Third green 2	8.075
	CRR073308	Third green 3	7.262
	CRR073309	Second white 1	2.763
	CRR073310	Second white 2	3.064
	CRR073311	Second white 3	2.667
	CRR073312	Silver flowering 1	1.540
	CRR073313	Silver flowering 2	1.933
	CRR073314	Silver flowering 3	2.780
	CRR073315	Gold flowering 1	19.854
	CRR073316	Gold flowering 2	32.463
	CRR073317	Gold flowering 3	14.362
	CRR073318	Tawny withering 1	20.159
	CRR073319	Tawny withering 2	13.912
	CRR073320	Tawny withering 3	15.959