Gene detail

Detail information of GWHGAAZE025704

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007018504.1	0	NADP-dependent malic enzyme [Theobroma cacao]
COG	YP_007218386.1	1E-166	NAD-dependent malic enzyme
Swissprot	tr\|P51615\|MAOX_VITVI	0	NADP-dependent malic enzyme
trEMBL	tr\|A0A022QH43\|A0A022QH43_ERYGU	0	Malic enzyme {ECO:0000256\|RuleBase:RU003426}
TAIR10	AT1G79750.1	0	NADP-malic enzyme 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	66355869	66362167	+
GWHAAZE00000007	mRNA	66355869	66362167	+
GWHAAZE00000007	exon	66355869	66355976	+
GWHAAZE00000007	exon	66356074	66356148	+
GWHAAZE00000007	exon	66356513	66356664	+
GWHAAZE00000007	exon	66356753	66356858	+
GWHAAZE00000007	exon	66357237	66357302	+
GWHAAZE00000007	exon	66357572	66357667	+
GWHAAZE00000007	exon	66357795	66357866	+
GWHAAZE00000007	exon	66358020	66358103	+
GWHAAZE00000007	exon	66359044	66359091	+
GWHAAZE00000007	exon	66359203	66359256	+
GWHAAZE00000007	exon	66359769	66359867	+
GWHAAZE00000007	exon	66360402	66360479	+
GWHAAZE00000007	exon	66360592	66360666	+
GWHAAZE00000007	exon	66360766	66360856	+
GWHAAZE00000007	exon	66361503	66361631	+
GWHAAZE00000007	exon	66362079	66362167	+
GWHAAZE00000007	CDS	66355869	66355976	+
GWHAAZE00000007	CDS	66356074	66356148	+
GWHAAZE00000007	CDS	66356513	66356664	+
GWHAAZE00000007	CDS	66356753	66356858	+
GWHAAZE00000007	CDS	66357237	66357302	+
GWHAAZE00000007	CDS	66357572	66357667	+
GWHAAZE00000007	CDS	66357795	66357866	+
GWHAAZE00000007	CDS	66358020	66358103	+
GWHAAZE00000007	CDS	66359044	66359091	+
GWHAAZE00000007	CDS	66359203	66359256	+
GWHAAZE00000007	CDS	66359769	66359867	+
GWHAAZE00000007	CDS	66360402	66360479	+
GWHAAZE00000007	CDS	66360592	66360666	+
GWHAAZE00000007	CDS	66360766	66360856	+
GWHAAZE00000007	CDS	66361503	66361631	+
GWHAAZE00000007	CDS	66362079	66362167	+

Transcript Sequence
>GWHTAAZE025738 ATGAGGGACCCTCGCCATAACAAGGGACTTGCATTTACTGAAAAAGAAAGAGATGCTCATTACTTGCGCGGTCTTCTGCCTCCCGTGGTTATTAGCCAGGAGGTTCAGGAGAAGAAGTTAATGCACAGTATTCGCCAGTATGATGTACCATTGCACAAATACATGGCTATGATGGAACTTGAGGAAAGGAATGAGAGGCTGTTCTACAAGCTTCTCATTGATAATGTAGAGGAACTTCTTCCAGTTGTTTACACCCCAACTGTTGGCGAGGCTTGCCAAAAATATGGGAGCATTTTTAAGCGCCCTCAGGGTGTCTACATTAGTTTGAAAGACAAGGGGAAGATTCTTGAGATATTGAAAAACTGGCCTGAGAGGAGCATTCAAGTTATTGTTGTGACTGATGGTGAACGAATTTTGGGACTCGGAGACCTTGGCTGTCAGGGGATGGGCATACCTGTCGGGAAACTGGCTTTGTATACTGCACTCGGAGGAGTTAGACCTTCAACTTGCTTGCCTATAACTATTGATGTGGGAACAAATAACGAGAAGTTATTGAATGATGAGTTTTATATTGGGCTCAGACAAAGGAGGGCTACTGGGCAGGAATATGCTGACTTTCTACATGAATTTATGACTGCTGTTAAGCAAAACTATGGTGAAAAAGTTCTTGTACAGTTTGAAGATTTTGCAAATCATAATGCTTTTGACCTGTTGGCAAAATATGGCACTACCCATTTGGTCTTCAATGACGATATACAGGCTGGGACTGGTATAGCAGAACTTATAGCTCTTGAGATGTCAAAGCAGACAAAGATTCCGGTGGAAGAGACCCGCAAGAATATCTGGCTTGTGGACTCAAAGGGATTAATTGTTAGTTCACGCAAGGAATCCCTTCAACACTTCAAGAAGCCTTGGGCTCATGAACATGAACCTGTTTCTAATCTCTTAGATGCTGTCAAGAGACCTCTTATTATGGCTCTCTCCAACCCAACCTCACAATCCGAGTGCACAGCTGAAGAAGCTTATAACTGGACTGAGGGTCGTGCGATTTTTTCAAGTGGAAGTCCATTCGATCCGGTTGAATACAATGGAAAACTTTTCATACCCGGCCAGGCAAACAATGCTTATATTTTCCCTGGACTTGGTTTTGGTTTGGTTATGTCTGGCGCAATCCGTGTGCATGATGACATGCTTCTGGCAGCGGCGGAAGCTTTGGCCGGGCAAGTGGCAAAGGAACACTATGATAAGGGGATGATTTACCCGCCATTATCTAATATCCGAACAATCTCCGCCAACATTGCTGCTAACGTCGCTGCTAAAGCATATGAACTTGGTGTGGCAACACGGCTCCCTCGACCTGCAGATCTGGTGAAGCATGCCCAAAGCTGCATGTACACTCCCAATTACCGAACTTACCGGTGA

Network for GWHGAAZE025704

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00390.20	malic	62	241	4.70E-79
PF03949.16	Malic_M	312	441	1.40E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00029	E1.1.1.40, maeB	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710
		PPAR signaling pathway	map03320

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0004470	molecular_function	malic enzyme activity
GO:0004471	molecular_function	malate dehydrogenase (decarboxylating) (NAD+) activity
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	208.382
	SRR3591706	second leaf	61.763
	SRR3591707	mature leaf	130.241
	SRR3591708	Shoot apex	100.371
	SRR3591709	Stem	201.552
	SRR3591710	White floral bud	84.126
	SRR3591711	White flower	73.805
	SRR3591712	Green floral bud	83.565
	SRR3591713	Yellow flower	57.066
SRP173429	SRR8316895	Juvenile bud stage	90.089
	SRR8316896	Juvenile bud stage	102.786
	SRR8316897	Juvenile bud stage	56.753
	SRR8316894	Third green stage	52.769
	SRR8316900	Third green stage	146.319
	SRR8316901	Third green stage	136.801
	SRR8316898	Complete white stage	70.780
	SRR8316899	Complete white stage	261.616
	SRR8316903	Complete white stage	120.185
	SRR8316902	Silver flowering stage	20.693
	SRR8316904	Silver flowering stage	33.347
	SRR8316905	Silver flowering stage	14.881
	SRR8316906	Gold flowering stage	24.035
	SRR8316907	Gold flowering stage	29.183
	SRR8316908	Gold flowering stage	43.663
SRP132670	SRR6706286	Control	195.486
	SRR6706287	Light intensity 50%	172.998
	SRR6706288	Light intensity 20%	180.077
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	122.515
	CNS0095593	Slightly white alabastrum(diploid) 2	126.039
	CNS0095594	Slightly white alabastrum(diploid) 3	95.821
	CNS0095595	Whole white alabastrum(diploid) 2	95.515
	CNS0095596	Whole white alabastrum(diploid) 3	95.793
	CNS0095597	Whole white alabastrum(diploid) 4	92.956
	CNS0095598	Silvery flower (diploied) 1	195.650
	CNS0095599	Silvery flower (diploied) 2	214.860
	CNS0095600	Silvery flower (diploied) 3	118.386
	CNS0095601	Golden flower (diploid) 1	183.406
	CNS0095602	Golden flower (diploid) 2	174.409
	CNS0095603	Golden flower (diploid) 3	172.558
	CNS0095604	Slightly white alabastrum(tetraploid) 1	118.738
	CNS0095605	Slightly white alabastrum(tetraploid) 2	95.898
	CNS0095606	Slightly white alabastrum(tetraploid) 3	242.670
	CNS0095607	Whole white alabastrum(tetraploid) 1	68.584
	CNS0095608	Whole white alabastrum(tetraploid) 2	59.973
	CNS0095609	Whole white alabastrum(tetraploid) 3	123.137
	CNS0095610	Silvery flower (tetraploid) 1	93.329
	CNS0095611	Silvery flower (tetraploid) 2	128.101
	CNS0095612	Silvery flower (tetraploid) 3	67.493
	CNS0095613	Golden flower (tetraploid) 1	61.502
	CNS0095614	Golden flower (tetraploid) 2	118.269
	CNS0095615	Golden flower (tetraploid) 3	30.548
CRA001975	CRR073297	Stem 1	173.570
	CRR073298	Stem 2	158.482
	CRR073299	Stem 3	171.568
	CRR073300	Leaf 1	179.591
	CRR073301	Leaf 2	194.613
	CRR073302	Leaf 3	150.507
	CRR073303	Juvenile bud 1	222.861
	CRR073304	Juvenile bud 2	123.380
	CRR073305	Juvenile bud 3	304.221
	CRR073306	Third green 1	45.039
	CRR073307	Third green 2	61.977
	CRR073308	Third green 3	61.922
	CRR073309	Second white 1	14.568
	CRR073310	Second white 2	13.741
	CRR073311	Second white 3	4.801
	CRR073312	Silver flowering 1	2.510
	CRR073313	Silver flowering 2	11.602
	CRR073314	Silver flowering 3	12.722
	CRR073315	Gold flowering 1	49.325
	CRR073316	Gold flowering 2	76.832
	CRR073317	Gold flowering 3	66.484
	CRR073318	Tawny withering 1	233.282
	CRR073319	Tawny withering 2	167.191
	CRR073320	Tawny withering 3	218.913