Gene detail

Detail information of GWHGAAZE025698

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004139354.1	0	PREDICTED: SNW domain-containing protein 1-like [Cucumis sativus]
Swissprot	tr\|O80653\|SKIP_ARATH	0	SNW/SKI-interacting protein
trEMBL	tr\|A0A0A0LIR8\|A0A0A0LIR8_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN60592.1}
TAIR10	AT1G77180.2	9E-98	chromatin protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	66228396	66229961	+
GWHAAZE00000007	mRNA	66228396	66229961	+
GWHAAZE00000007	exon	66228396	66229235	+
GWHAAZE00000007	exon	66229332	66229961	+
GWHAAZE00000007	CDS	66228396	66229235	+
GWHAAZE00000007	CDS	66229332	66229961	+

Transcript Sequence
>GWHTAAZE025732 ATGGGTAGGAAGAAGGATGCAAATTCGGGGCAGAAGACATTACCTGTTACGGTGGATGAGCATGGTAGGGTCACGTTTGATGCTATTGTGAAGCAGAATGAAAATGCTTCAAAGATTGTTTATTCTCAGCATAGGGATCTTGTGCCCAAGATTTTAAAAGATGATATGGATGAAGACGAAGAATTGGATGAGATACAGAAAGAGATTGAGGAGACAACGGAGCAAACTAAAGCAGCGTTGGAGAAGATTGTTAACGTGAGGTTGAGTGCAGCACAGCCTAAAAATGTTCCCGCTCAATCATCAGATTCAAATTTTATAAAGTACAAGCCTTCACAGCAGTCGGCTGCATTTAATTCGGGTGCGAAGGAGAGGATCATTAGGATGGTGGAGATGCCTGTGGACCCATTGGAGCCGCCAAAGTTCAAACACAAGAGGGTTCCCAAGGCTAATGGCTCACCACCCGTACCAGTCATGCACTCTCCACCTCGGCCCGTAACCGTGAAGGATCAGCAAGATTGGAAAATCCCACCGTGCATTTCAAACTGGAAAAACCCTAAAGGGTATACCATCCCGCTAGATAAGCGTCTGGCTGCAGATGGTAGGGGGCTTCAAGAGGTGCAGATTAATGATAACTTTGCGAAGCTTTCAGAGGCATTGTACGTTGCTGAACAGAAGGCTAGAGAGGCTGTTGCTATGCGGTCCAAGGTTCAAAAGGAGATGATGATGAAAGAGAAAGAAAGAAAGGAACAAGAATTGCGGGCTTTAGCCCAAAAGGCGAGATCCGAGAGAACCGGGGCTGCACCTCCCGCTGCCATCCCGCTGCCTCCTAGCAAGAGTATGAGAGAGAAAATTCGCGAGGAGCGGCGCCGAGAGAGGGAGAGAGAGAGAAGGTTAGAGGCCAAGGATGCTGCAATGGGGAAAAAGAGTAAAATTACCAGAGACAGAGACCGTGATATCAGTGAGAAAGTTGCACTCGGGATGGCATCTGCAGGAGCCGGACGAGGCGGGGAGGTTATGTACGACCAGAGATTGTTCAACCAAGAAAAAGGGATGGATTCCGGTTTTGCCACTGATGATCAGTACAATGTCTATGATAAGGGTCTTTTTACTGCTCAGCCTACCCTTTCGACCCTCTACAGGCCAAAGAAAGATGCAGATAATGATATGTATGGAGGTGCAGATGAGCAGATGGAGAAGATTATGAAGACTGAACGGTTTAAGCCTGATAGGGCTTTTGCTGGTACGAATGAGAAGACCGGACCAAGGGATAGACCAGTGGAATTTGAGAAGGATGCTGAAGAAGCTGATCCATTTGGTTTGGACCAGTTCTTGACGGAGGTTAAAAAGGGTAAGAAAGCTATGGATAAAGTCGGCAGTGGAGGGACCATGAAAGCTAGTGCTGGATCATCCATGAGAGATGGACTTGACGGATCCGGTAGATCTCGTATTGGCTTTGAAAGGGGCCGTTAA

Network for GWHGAAZE025698

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02731.16	SKIP_SNW	105	263	5.80E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06063	SNW1, SKIIP, SKIP	Spliceosome	map03040
K06063	SNW1, SKIIP, SKIP	Notch signaling pathway	map04330

Gene Ontology

GO term	Ontology	Name
GO:0000398	biological_process	mRNA splicing, via spliceosome
GO:0005681	cellular_component	spliceosomal complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.987
	SRR3591706	second leaf	44.081
	SRR3591707	mature leaf	50.147
	SRR3591708	Shoot apex	67.505
	SRR3591709	Stem	65.142
	SRR3591710	White floral bud	77.496
	SRR3591711	White flower	94.197
	SRR3591712	Green floral bud	64.942
	SRR3591713	Yellow flower	92.743
SRP173429	SRR8316895	Juvenile bud stage	35.636
	SRR8316896	Juvenile bud stage	48.786
	SRR8316897	Juvenile bud stage	20.766
	SRR8316894	Third green stage	18.362
	SRR8316900	Third green stage	50.717
	SRR8316901	Third green stage	50.139
	SRR8316898	Complete white stage	23.161
	SRR8316899	Complete white stage	72.722
	SRR8316903	Complete white stage	51.448
	SRR8316902	Silver flowering stage	33.490
	SRR8316904	Silver flowering stage	46.024
	SRR8316905	Silver flowering stage	25.014
	SRR8316906	Gold flowering stage	82.007
	SRR8316907	Gold flowering stage	78.261
	SRR8316908	Gold flowering stage	86.642
SRP132670	SRR6706286	Control	69.260
	SRR6706287	Light intensity 50%	68.332
	SRR6706288	Light intensity 20%	66.180
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.637
	CNS0095593	Slightly white alabastrum(diploid) 2	41.740
	CNS0095594	Slightly white alabastrum(diploid) 3	42.701
	CNS0095595	Whole white alabastrum(diploid) 2	40.824
	CNS0095596	Whole white alabastrum(diploid) 3	32.859
	CNS0095597	Whole white alabastrum(diploid) 4	38.709
	CNS0095598	Silvery flower (diploied) 1	78.386
	CNS0095599	Silvery flower (diploied) 2	60.477
	CNS0095600	Silvery flower (diploied) 3	96.411
	CNS0095601	Golden flower (diploid) 1	67.236
	CNS0095602	Golden flower (diploid) 2	96.699
	CNS0095603	Golden flower (diploid) 3	97.328
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.844
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.773
	CNS0095606	Slightly white alabastrum(tetraploid) 3	103.704
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.026
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.155
	CNS0095609	Whole white alabastrum(tetraploid) 3	67.466
	CNS0095610	Silvery flower (tetraploid) 1	122.127
	CNS0095611	Silvery flower (tetraploid) 2	96.011
	CNS0095612	Silvery flower (tetraploid) 3	94.382
	CNS0095613	Golden flower (tetraploid) 1	97.354
	CNS0095614	Golden flower (tetraploid) 2	118.168
	CNS0095615	Golden flower (tetraploid) 3	108.914
CRA001975	CRR073297	Stem 1	58.094
	CRR073298	Stem 2	58.973
	CRR073299	Stem 3	62.541
	CRR073300	Leaf 1	58.057
	CRR073301	Leaf 2	57.329
	CRR073302	Leaf 3	47.122
	CRR073303	Juvenile bud 1	56.577
	CRR073304	Juvenile bud 2	51.093
	CRR073305	Juvenile bud 3	82.361
	CRR073306	Third green 1	64.586
	CRR073307	Third green 2	49.850
	CRR073308	Third green 3	60.225
	CRR073309	Second white 1	52.136
	CRR073310	Second white 2	56.850
	CRR073311	Second white 3	62.500
	CRR073312	Silver flowering 1	63.116
	CRR073313	Silver flowering 2	58.477
	CRR073314	Silver flowering 3	57.725
	CRR073315	Gold flowering 1	34.075
	CRR073316	Gold flowering 2	46.952
	CRR073317	Gold flowering 3	40.747
	CRR073318	Tawny withering 1	50.473
	CRR073319	Tawny withering 2	41.959
	CRR073320	Tawny withering 3	47.141