Gene detail

Detail information of GWHGAAZE025685

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656283.1	0	PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein [Vitis vinifera]
COG	YP_007067134.1	0.000000003	cyclic nucleotide-binding protein
Swissprot	tr\|Q9SL76\|P2C19_ARATH	0	Probable inactive cyclic nucleotide-dependent protein kinase At2g20050
trEMBL	tr\|D7TBJ1\|D7TBJ1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28026.3}
TAIR10	AT2G20050.1	0	protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	65921354	65931248	+
GWHAAZE00000007	mRNA	65921354	65931248	+
GWHAAZE00000007	exon	65921354	65921899	+
GWHAAZE00000007	exon	65923140	65923271	+
GWHAAZE00000007	exon	65923785	65924015	+
GWHAAZE00000007	exon	65924153	65924278	+
GWHAAZE00000007	exon	65924460	65924522	+
GWHAAZE00000007	exon	65924735	65924817	+
GWHAAZE00000007	exon	65925649	65925880	+
GWHAAZE00000007	exon	65926378	65926694	+
GWHAAZE00000007	exon	65927471	65927558	+
GWHAAZE00000007	exon	65928115	65928181	+
GWHAAZE00000007	exon	65928454	65928737	+
GWHAAZE00000007	exon	65928848	65928913	+
GWHAAZE00000007	exon	65929657	65929778	+
GWHAAZE00000007	exon	65930317	65930434	+
GWHAAZE00000007	exon	65931003	65931248	+
GWHAAZE00000007	CDS	65921354	65921899	+
GWHAAZE00000007	CDS	65923140	65923271	+
GWHAAZE00000007	CDS	65923785	65924015	+
GWHAAZE00000007	CDS	65924153	65924278	+
GWHAAZE00000007	CDS	65924460	65924522	+
GWHAAZE00000007	CDS	65924735	65924817	+
GWHAAZE00000007	CDS	65925649	65925880	+
GWHAAZE00000007	CDS	65926378	65926694	+
GWHAAZE00000007	CDS	65927471	65927558	+
GWHAAZE00000007	CDS	65928115	65928181	+
GWHAAZE00000007	CDS	65928454	65928737	+
GWHAAZE00000007	CDS	65928848	65928913	+
GWHAAZE00000007	CDS	65929657	65929778	+
GWHAAZE00000007	CDS	65930317	65930434	+
GWHAAZE00000007	CDS	65931003	65931248	+

Transcript Sequence
>GWHTAAZE025719 ATGGATGCTGTTGAGGCATGTAATGCTGCGTTCTTGACGACAAATTCACAATTGCATGCTGACACTGTTGATGATAGCATGAGTGGCACAACCGCAATTACAATACTGGTTAGGGGTCGAACACTTTACATTGCTAATTCGGGTGATTCTAGGGCTGTCATAGCAGAAAAGAGAGGGGAGGATATTGTGGCTGTTGACCTATCAATTGACCAAACTCCATTTCGAAATGATGAACTTGAACGGGTTAAGCAATGTGGAGCTAGGGTTCTTACTTTGGATCAGATTGAAGGACTGAAGAATCCCGAAGTGCAGTGTTGGGATACTGAAGAAGGTGATGATGGTGATCCTCCTAGACTGTGGGTCCCAAATGGTATGTACCCCGGTACAGCTTTTACAAGAAGTATAGGTGATTCTGTTGCTGAGTCGATTGGTGTTGTTGCAAATCCCGAGATTGTCGTGTTGGAACTTACACCGGATCATCCTTTCTTTGTAATTGCTAGTGATGGGGTGTTTGAGTTTCTTTCTAGCCAAACTGTGGTTGACATGGTTGCAAATTTTAAGGATCCCCGTGATGCTTGTGCAGCAATCGTCGCTGAATCTTATCGACTTTGGCTTCAGTACGAAACCCGCACAGATGACATTACTGTGATAGTTGTGCATGTTAAGGGGTTAACTGATAATTCTGTTTGTCAACCAGCAAGTTCTGGTGCTGTTTTAAGACCGCCCATACCTCAAGTTGTAGAGATGACTGGATCAGAGTCTCCTTCTCCAATGGGGTGGAACTCTAGGAACCAGCGTGTAAGGCATGATGTTTCACGGACTCGTCTGCGTGCTATTGAAACTTCTCTAGAGAATGGGCAAGTATGGGTTCCTCCTTCTCCAGCCCACAGGAAAACTTGGGAAGAAGAAGCACACATAGAGCGGGCCTTGCATGATCATTTTCTTTTTAGAAAACTTACTGATTCTCAGTGTCACGTTTTGTTGGATTGCATGCAAAGAGTGGAGGTTCAACCAGGGGAAGTTGTAGTGAAGCAGGGTGGGGAAGGTGACTGTTTTTATGTTGTTGGGAGTGGAGAATTTGAGGTCTTGGCAACACAGGAAGAGACTAATGGAGAGGTGTCTAGGGTTTTGCATCGATATACAGCTGAAAAGTTGTCATCCTTTGGAGAGCTTGCTTTAATGTATAATAAACCTCTCCAAGCTTCTGTTCGTGCAGTGACGAGTGGTACTCTCTGGGCATTAAAGAGAGAAGATTTTAGAGGAATTCTTATGTCAGAGTTTTCAAATTTGTCATCGTTGAAGCTGCTTCGGTCAGTGGATCTTCTCTCAAAACTCACAATTTTACAGCTTAGTCAAATTGCAGATTCTCTTTCTGAAGTCTCCTTCTCTGATGGGCAGACAATTGTGGATAAGGATGATGGTCTTGCAGGGTTGTATGTGATCCAAAAGGGACAAGTGAGAATTACGTTTGATTCAGAGTCAATAAGAAGCCGAAATGCCTCGAGTCTCATGTCTGAATATCAAAATCAGGATGATTATTTGCAGAACGATAAAGATCTCTCCTTGGAGAAGAGTGAGGGAAGCTATTTTGGAGAATGGACACTTCTTAGCGAACACATTGATTCCTTAAGTGCCACTGCTGTGGGTGATGTGGTATGTGCTGTTTTAACCAAGGAAAAGTTCGATTCGGTTGTTGGCCCTTTAGCAAAGCTTTCCCAAGATGATTACAAGTCAAGGGAGAATTCTACCCGGTTTTCCAAGGAATCTGTCGAAAGTATTGATCCATCAGCCCTTACAGAGGTTCAGCTCTCTGATTTGGAGTGGAGAACGTGCTTGTACTCTACTGATTGCAGTGAGATTGGGCTTGTACTTCTAAAAGACTCAGAAACCGAAAAGTCGCTGAGCTTGAAAAGATTTTCAAAGCAGAAGATAAAAAAGCTAGGAAAAGAAGCACAGGTTTTAAAGGAGAAGAAGCTAATGAAAAGTATGAGCCATTCGGCTTGTGTGCCCCAACTCCTATGCACTTGTGCCGACCAATCATATGCTGGAATACTTATGAATACGCGAATAGCTTGCCCTATTGCTTCAATACTTCACACCCCACTCGATGAACTGTCTGCCCGCTTCTGTGCTGCCTCTGTCGTTATAGCGTTGGAAGATTTACACAAGGTCAGTATTCTCTACAGAGGTGTGTCTCCAGACGTTCTAATGTTTGATCAGACGGGACATTTACAGCTTGTAGACTTCAGATTTGGAAAGAAGTTATCTGGAGAGAGAACATTTACGATATGTGGGATGGCAGACTCTTTATCCCCAGAAATAGTCCAAGGGAAAGGTCACGGTCTCCCAGCTGACTGGGAAATGCCATTTGGCTCTTGGCGCGAAAGTGAGCTTGATACATTCGCAAAGATTGCCAAAGGGCAACTCACTCTTCCGCATACTTTCACCGCTCAAGCTGTTGATCTCATCACTAAGCTACTCGAAGTTGATGAAACTGCAAGACTCGGAACCCTAGGTGCAGACTCCGTCAAAATTCATCCGTGGTTTGATGGAGTTGACTGGAGAGGAATATCGGACCGTACCTATCCCATTCCACAAGAGATCATTTCTCGTATAAATCAATATACGGGAAGTCGTGCCGAGGAAAATGTTGCTCCTCTTCTTTCCCCAACCCGAGACTTAGATGAACTCAACACCCCAGAATGGCTTGAGGACTGGTAG

Network for GWHGAAZE025685

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	6	200	1.10E-29
PF00027.30	cNMP_binding	334	425	3.30E-19
PF00027.30	cNMP_binding	460	564	4.80E-08
PF00069.26	Pkinase	625	849	3.60E-18

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_PKA-PKG

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0003824	molecular_function	catalytic activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.340
	SRR3591706	second leaf	16.931
	SRR3591707	mature leaf	13.967
	SRR3591708	Shoot apex	25.186
	SRR3591709	Stem	12.917
	SRR3591710	White floral bud	10.789
	SRR3591711	White flower	10.729
	SRR3591712	Green floral bud	22.167
	SRR3591713	Yellow flower	6.467
SRP173429	SRR8316895	Juvenile bud stage	10.252
	SRR8316896	Juvenile bud stage	13.641
	SRR8316897	Juvenile bud stage	6.768
	SRR8316894	Third green stage	6.549
	SRR8316900	Third green stage	18.467
	SRR8316901	Third green stage	17.359
	SRR8316898	Complete white stage	4.629
	SRR8316899	Complete white stage	27.963
	SRR8316903	Complete white stage	9.329
	SRR8316902	Silver flowering stage	4.301
	SRR8316904	Silver flowering stage	6.614
	SRR8316905	Silver flowering stage	2.783
	SRR8316906	Gold flowering stage	10.379
	SRR8316907	Gold flowering stage	8.676
	SRR8316908	Gold flowering stage	9.439
SRP132670	SRR6706286	Control	15.499
	SRR6706287	Light intensity 50%	15.699
	SRR6706288	Light intensity 20%	17.086
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.344
	CNS0095593	Slightly white alabastrum(diploid) 2	8.147
	CNS0095594	Slightly white alabastrum(diploid) 3	6.408
	CNS0095595	Whole white alabastrum(diploid) 2	6.567
	CNS0095596	Whole white alabastrum(diploid) 3	6.740
	CNS0095597	Whole white alabastrum(diploid) 4	7.552
	CNS0095598	Silvery flower (diploied) 1	8.631
	CNS0095599	Silvery flower (diploied) 2	6.864
	CNS0095600	Silvery flower (diploied) 3	12.154
	CNS0095601	Golden flower (diploid) 1	6.510
	CNS0095602	Golden flower (diploid) 2	9.769
	CNS0095603	Golden flower (diploid) 3	10.904
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.669
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.944
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.105
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.893
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.824
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.903
	CNS0095610	Silvery flower (tetraploid) 1	13.212
	CNS0095611	Silvery flower (tetraploid) 2	16.170
	CNS0095612	Silvery flower (tetraploid) 3	7.747
	CNS0095613	Golden flower (tetraploid) 1	3.760
	CNS0095614	Golden flower (tetraploid) 2	7.469
	CNS0095615	Golden flower (tetraploid) 3	2.388
CRA001975	CRR073297	Stem 1	32.732
	CRR073298	Stem 2	30.425
	CRR073299	Stem 3	22.489
	CRR073300	Leaf 1	37.440
	CRR073301	Leaf 2	31.523
	CRR073302	Leaf 3	24.929
	CRR073303	Juvenile bud 1	30.577
	CRR073304	Juvenile bud 2	18.368
	CRR073305	Juvenile bud 3	37.953
	CRR073306	Third green 1	2.309
	CRR073307	Third green 2	1.594
	CRR073308	Third green 3	3.224
	CRR073309	Second white 1	2.944
	CRR073310	Second white 2	3.593
	CRR073311	Second white 3	3.991
	CRR073312	Silver flowering 1	3.534
	CRR073313	Silver flowering 2	2.723
	CRR073314	Silver flowering 3	1.316
	CRR073315	Gold flowering 1	16.073
	CRR073316	Gold flowering 2	24.118
	CRR073317	Gold flowering 3	14.507
	CRR073318	Tawny withering 1	15.014
	CRR073319	Tawny withering 2	12.164
	CRR073320	Tawny withering 3	14.672