Gene detail

Detail information of GWHGAAZE025681

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284044.2	0	PREDICTED: casein kinase I [Vitis vinifera]
COG	YP_632759.1	3E-18	serine/threonine-protein kinase PKN1
Swissprot	tr\|P42158\|KC1D_ARATH	4E-174	Casein kinase I isoform delta-like
trEMBL	tr\|D7TBJ4\|D7TBJ4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28029.3}
TAIR10	AT4G28880.1	3E-164	casein kinase I-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	65869892	65874819	+
GWHAAZE00000007	mRNA	65869892	65874819	+
GWHAAZE00000007	exon	65869892	65869967	+
GWHAAZE00000007	exon	65870084	65870124	+
GWHAAZE00000007	exon	65871207	65871300	+
GWHAAZE00000007	exon	65871405	65871553	+
GWHAAZE00000007	exon	65871939	65872034	+
GWHAAZE00000007	exon	65872151	65872221	+
GWHAAZE00000007	exon	65872593	65872654	+
GWHAAZE00000007	exon	65872730	65872793	+
GWHAAZE00000007	exon	65872900	65872984	+
GWHAAZE00000007	exon	65873073	65873199	+
GWHAAZE00000007	exon	65874275	65874357	+
GWHAAZE00000007	exon	65874479	65874557	+
GWHAAZE00000007	exon	65874707	65874819	+
GWHAAZE00000007	CDS	65869892	65869967	+
GWHAAZE00000007	CDS	65870084	65870124	+
GWHAAZE00000007	CDS	65871207	65871300	+
GWHAAZE00000007	CDS	65871405	65871553	+
GWHAAZE00000007	CDS	65871939	65872034	+
GWHAAZE00000007	CDS	65872151	65872221	+
GWHAAZE00000007	CDS	65872593	65872654	+
GWHAAZE00000007	CDS	65872730	65872793	+
GWHAAZE00000007	CDS	65872900	65872984	+
GWHAAZE00000007	CDS	65873073	65873199	+
GWHAAZE00000007	CDS	65874275	65874357	+
GWHAAZE00000007	CDS	65874479	65874557	+
GWHAAZE00000007	CDS	65874707	65874819	+

Transcript Sequence
>GWHTAAZE025715 ATGGAAAGGATCGTCGGTGGTAAATACAAGCTCGGTCGTAAGATTGGAAGTGGATCATTTGGAGAAATTCATCTCGCTACTCATATCGATACTTTTGAGATCGTTGCAGTTAAGATCGAGAACAGCAAGACAAAACATCCACAACTTTTGTATGAGGCCAAGTTGTACAACATTCTTCAGGGAGGAAGTATGTATCTTCTGAAACTCACTTGTGGTATACCTGGCACAAAATGGTCCGGCCTAGATGGCGATGATAATATACTGGTCCTCGATTTGCTGGGACCAAGTCTTGAAGACCTCTTTGTGTATTGTGGTCGAAAGTTTTCATTGAAGACCGTCTTAATGTTGGCTGATCAAATGGTTACAAGGATAGAATATGTGCATTCTAAAGGATTTTTACATCGTGATATTAAGCCTGATAACTTTCTCATGGGTCTTGGACGAAAAGCGAATCAGGTTTACATTATTGATTTTGGGCTTGCGAAACGATACCGAGATTCGACAACCAACCGCCATATTCCTTACAGAGAGAACAAAAATTTAACAGGAACCGCACGCTATGCAAGTTGCAATACTCATCTTGGAATTGAACAAAGTCGGCGGGATGATTTAGAGTCTCTTGGATATGTTTTACTATATTTCTTGAGAGGAAGCCTTCCGTGGCAGGGTTTAAAAGCTGCCACAAAGAAGCAAAAGTATGACAAGATATGTGAGAAGAAATTATCAACTCCTATTGAGGTTTTGTGCAAGACACACCCAGTGGAGTTTGCATCATACTTCCATTACTGTCATTCATTGACATTTGATCAACGACCTGATTATGGATTCTTGAAGCGTCTGTTCCGCGAATTATTCACTCGTGAAGGATATGAGTTTGATTACATTTTTGATTGGACCATCCTGAAGTATCAACAGACACAAAAGAGTAAAACTCAGCCTCGTGTATCAAATATTCTCTTTCCCAATCTGGTTTTCGGAAATTATAGAGAAAATTCCAAACCTGTAAATTGCGGCAAAACTGGAGAAGCCTGTTCATGTGGAGAGCAGCAGTCGAGCAGTTCAAGTGGATTCAGAAAAGCACCAAGGTTAGATCTTGCTGGTGCGCTTCTTGTGTCTCACAGGATAACATTAGCCAAATAG

Network for GWHGAAZE025681

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	9	235	3.70E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1

KEGG pathway

KO	Enzyme	pathway	mapID
K08960	CSNK1E	Wnt signaling pathway	map04310
		Hedgehog signaling pathway	map04340
		Hedgehog signaling pathway - fly	map04341
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Hippo signaling pathway - multiple species	map04392
		FoxO signaling pathway	map04068
		Circadian rhythm	map04710
		Circadian rhythm - fly	map04711

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.296
	SRR3591706	second leaf	32.885
	SRR3591707	mature leaf	43.253
	SRR3591708	Shoot apex	35.842
	SRR3591709	Stem	54.684
	SRR3591710	White floral bud	52.440
	SRR3591711	White flower	51.308
	SRR3591712	Green floral bud	34.970
	SRR3591713	Yellow flower	59.916
SRP173429	SRR8316895	Juvenile bud stage	34.290
	SRR8316896	Juvenile bud stage	40.718
	SRR8316897	Juvenile bud stage	23.528
	SRR8316894	Third green stage	17.543
	SRR8316900	Third green stage	47.086
	SRR8316901	Third green stage	44.655
	SRR8316898	Complete white stage	39.814
	SRR8316899	Complete white stage	105.346
	SRR8316903	Complete white stage	62.825
	SRR8316902	Silver flowering stage	33.888
	SRR8316904	Silver flowering stage	62.006
	SRR8316905	Silver flowering stage	27.034
	SRR8316906	Gold flowering stage	80.264
	SRR8316907	Gold flowering stage	69.136
	SRR8316908	Gold flowering stage	76.943
SRP132670	SRR6706286	Control	36.631
	SRR6706287	Light intensity 50%	39.366
	SRR6706288	Light intensity 20%	37.496
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.116
	CNS0095593	Slightly white alabastrum(diploid) 2	18.047
	CNS0095594	Slightly white alabastrum(diploid) 3	16.171
	CNS0095595	Whole white alabastrum(diploid) 2	17.308
	CNS0095596	Whole white alabastrum(diploid) 3	12.968
	CNS0095597	Whole white alabastrum(diploid) 4	18.283
	CNS0095598	Silvery flower (diploied) 1	43.100
	CNS0095599	Silvery flower (diploied) 2	31.493
	CNS0095600	Silvery flower (diploied) 3	80.568
	CNS0095601	Golden flower (diploid) 1	34.395
	CNS0095602	Golden flower (diploid) 2	85.235
	CNS0095603	Golden flower (diploid) 3	83.362
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.408
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.147
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.324
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.678
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.202
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.387
	CNS0095610	Silvery flower (tetraploid) 1	95.262
	CNS0095611	Silvery flower (tetraploid) 2	98.095
	CNS0095612	Silvery flower (tetraploid) 3	63.458
	CNS0095613	Golden flower (tetraploid) 1	51.342
	CNS0095614	Golden flower (tetraploid) 2	81.173
	CNS0095615	Golden flower (tetraploid) 3	97.586
CRA001975	CRR073297	Stem 1	34.711
	CRR073298	Stem 2	29.001
	CRR073299	Stem 3	22.663
	CRR073300	Leaf 1	30.891
	CRR073301	Leaf 2	30.717
	CRR073302	Leaf 3	20.982
	CRR073303	Juvenile bud 1	27.446
	CRR073304	Juvenile bud 2	28.089
	CRR073305	Juvenile bud 3	28.867
	CRR073306	Third green 1	22.623
	CRR073307	Third green 2	26.095
	CRR073308	Third green 3	23.580
	CRR073309	Second white 1	18.195
	CRR073310	Second white 2	20.213
	CRR073311	Second white 3	16.896
	CRR073312	Silver flowering 1	18.041
	CRR073313	Silver flowering 2	13.282
	CRR073314	Silver flowering 3	16.712
	CRR073315	Gold flowering 1	14.727
	CRR073316	Gold flowering 2	27.094
	CRR073317	Gold flowering 3	18.565
	CRR073318	Tawny withering 1	33.599
	CRR073319	Tawny withering 2	28.224
	CRR073320	Tawny withering 3	28.073