Detail information of GWHGAAZE025672


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP03299.11.17373E-32unnamed protein product [Coffea canephora]
Swissprottr|Q9ZSY8|IAA27_ARATH3E-11Auxin-responsive protein IAA27
trEMBLtr|A0A068U556|A0A068U556_COFCA4E-33Auxin-responsive protein {ECO:0000256|RuleBase:RU004549}
TAIR10AT4G29080.15E-10phytochrome-associated protein 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6576242465762816+
GWHAAZE00000007mRNA6576242465762816+
GWHAAZE00000007exon6576242465762816+
GWHAAZE00000007CDS6576242465762816+
Transcript Sequence

Network for GWHGAAZE025672

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14484IAA Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf277.981
SRR3591706second leaf58.048
SRR3591707mature leaf25.165
SRR3591708Shoot apex180.815
SRR3591709Stem348.388
SRR3591710White floral bud68.533
SRR3591711White flower37.295
SRR3591712Green floral bud93.946
SRR3591713Yellow flower12.068
SRP173429 SRR8316895Juvenile bud stage 72.020
SRR8316896Juvenile bud stage 56.552
SRR8316897Juvenile bud stage 33.275
SRR8316894Third green stage 30.921
SRR8316900Third green stage 48.096
SRR8316901Third green stage 43.694
SRR8316898Complete white stage 4.903
SRR8316899Complete white stage 118.596
SRR8316903Complete white stage 23.057
SRR8316902Silver flowering stage2.251
SRR8316904Silver flowering stage3.683
SRR8316905Silver flowering stage1.719
SRR8316906Gold flowering stage 5.049
SRR8316907Gold flowering stage 5.005
SRR8316908Gold flowering stage 9.884
SRP132670SRR6706286Control86.848
SRR6706287Light intensity 50%92.969
SRR6706288Light intensity 20%95.305
CNP0000432CNS0095592Slightly white alabastrum(diploid) 171.696
CNS0095593Slightly white alabastrum(diploid) 2108.126
CNS0095594Slightly white alabastrum(diploid) 372.686
CNS0095595Whole white alabastrum(diploid) 299.361
CNS0095596Whole white alabastrum(diploid) 325.227
CNS0095597Whole white alabastrum(diploid) 467.203
CNS0095598Silvery flower (diploied) 1175.818
CNS0095599Silvery flower (diploied) 2152.889
CNS0095600Silvery flower (diploied) 346.216
CNS0095601Golden flower (diploid) 1161.414
CNS0095602Golden flower (diploid) 293.386
CNS0095603Golden flower (diploid) 388.056
CNS0095604Slightly white alabastrum(tetraploid) 172.065
CNS0095605Slightly white alabastrum(tetraploid) 250.212
CNS0095606Slightly white alabastrum(tetraploid) 3171.563
CNS0095607Whole white alabastrum(tetraploid) 155.884
CNS0095608Whole white alabastrum(tetraploid) 217.679
CNS0095609Whole white alabastrum(tetraploid) 340.888
CNS0095610Silvery flower (tetraploid) 112.052
CNS0095611Silvery flower (tetraploid) 245.804
CNS0095612Silvery flower (tetraploid) 316.221
CNS0095613Golden flower (tetraploid) 12.698
CNS0095614Golden flower (tetraploid) 220.321
CNS0095615Golden flower (tetraploid) 36.304
CRA001975CRR073297Stem 1103.221
CRR073298Stem 2112.561
CRR073299Stem 3139.501
CRR073300Leaf 1119.648
CRR073301Leaf 2108.634
CRR073302Leaf 3103.767
CRR073303Juvenile bud 185.030
CRR073304Juvenile bud 242.257
CRR073305Juvenile bud 3127.385
CRR073306Third green 15.875
CRR073307Third green 28.049
CRR073308Third green 310.735
CRR073309Second white 16.547
CRR073310Second white 25.352
CRR073311Second white 31.888
CRR073312Silver flowering 10.365
CRR073313Silver flowering 20.720
CRR073314Silver flowering 30.505
CRR073315Gold flowering 131.317
CRR073316Gold flowering 223.405
CRR073317Gold flowering 337.609
CRR073318Tawny withering 1248.136
CRR073319Tawny withering 2230.272
CRR073320Tawny withering 3358.413