Detail information of GWHGAAZE025653


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284313.10PREDICTED: aspartate aminotransferase, cytoplasmic [Vitis vinifera]
COGYP_006285770.16E-94aspartate aminotransferase
Swissprottr|P28734|AATC_DAUCA0Aspartate aminotransferase, cytoplasmic
trEMBLtr|D7TBL7|D7TBL7_VITVI0Aspartate aminotransferase {ECO:0000256|RuleBase:RU000480}
TAIR10AT5G11520.12E-161aspartate aminotransferase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6534428565351609-
GWHAAZE00000007mRNA6534428565351609-
GWHAAZE00000007exon6535135465351609-
GWHAAZE00000007exon6535060865350679-
GWHAAZE00000007exon6534982765349888-
GWHAAZE00000007exon6534965065349733-
GWHAAZE00000007exon6534754865347647-
GWHAAZE00000007exon6534732965347449-
GWHAAZE00000007exon6534652265346685-
GWHAAZE00000007exon6534626465346401-
GWHAAZE00000007exon6534517965345243-
GWHAAZE00000007exon6534428565344438-
GWHAAZE00000007five_prime_UTR6535142365351609-
GWHAAZE00000007CDS6535135465351422-
GWHAAZE00000007CDS6535060865350679-
GWHAAZE00000007CDS6534982765349888-
GWHAAZE00000007CDS6534965065349733-
GWHAAZE00000007CDS6534754865347647-
GWHAAZE00000007CDS6534732965347449-
GWHAAZE00000007CDS6534652265346685-
GWHAAZE00000007CDS6534626465346401-
GWHAAZE00000007CDS6534517965345243-
GWHAAZE00000007CDS6534428565344438-
Transcript Sequence

Network for GWHGAAZE025653

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00155.22Aminotran_1_2363293.10E-70
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14454GOT1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Carbon fixation in photosynthetic organismsmap00710
Alanine, aspartate and glutamate metabolismmap00250
Cysteine and methionine metabolismmap00270
Arginine biosynthesismap00220
Arginine and proline metabolismmap00330
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Isoquinoline alkaloid biosynthesismap00950
Tropane, piperidine and pyridine alkaloid biosynthesismap00960

Gene Ontology

GO term OntologyName
GO:0009058biological_processbiosynthetic process
GO:0006520biological_processcellular amino acid metabolic process
GO:0003824molecular_functioncatalytic activity
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0008483molecular_functiontransaminase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf94.063
SRR3591706second leaf15.595
SRR3591707mature leaf15.453
SRR3591708Shoot apex41.578
SRR3591709Stem72.428
SRR3591710White floral bud51.070
SRR3591711White flower49.448
SRR3591712Green floral bud50.828
SRR3591713Yellow flower25.066
SRP173429 SRR8316895Juvenile bud stage 56.758
SRR8316896Juvenile bud stage 96.270
SRR8316897Juvenile bud stage 49.970
SRR8316894Third green stage 39.274
SRR8316900Third green stage 121.317
SRR8316901Third green stage 100.857
SRR8316898Complete white stage 46.408
SRR8316899Complete white stage 105.883
SRR8316903Complete white stage 58.129
SRR8316902Silver flowering stage38.387
SRR8316904Silver flowering stage45.749
SRR8316905Silver flowering stage22.923
SRR8316906Gold flowering stage 56.112
SRR8316907Gold flowering stage 72.985
SRR8316908Gold flowering stage 71.871
SRP132670SRR6706286Control113.277
SRR6706287Light intensity 50%110.422
SRR6706288Light intensity 20%122.213
CNP0000432CNS0095592Slightly white alabastrum(diploid) 151.815
CNS0095593Slightly white alabastrum(diploid) 250.524
CNS0095594Slightly white alabastrum(diploid) 351.136
CNS0095595Whole white alabastrum(diploid) 245.551
CNS0095596Whole white alabastrum(diploid) 359.294
CNS0095597Whole white alabastrum(diploid) 448.333
CNS0095598Silvery flower (diploied) 151.740
CNS0095599Silvery flower (diploied) 251.963
CNS0095600Silvery flower (diploied) 372.779
CNS0095601Golden flower (diploid) 140.856
CNS0095602Golden flower (diploid) 264.051
CNS0095603Golden flower (diploid) 360.293
CNS0095604Slightly white alabastrum(tetraploid) 165.843
CNS0095605Slightly white alabastrum(tetraploid) 254.001
CNS0095606Slightly white alabastrum(tetraploid) 367.476
CNS0095607Whole white alabastrum(tetraploid) 145.034
CNS0095608Whole white alabastrum(tetraploid) 241.964
CNS0095609Whole white alabastrum(tetraploid) 380.569
CNS0095610Silvery flower (tetraploid) 159.177
CNS0095611Silvery flower (tetraploid) 258.892
CNS0095612Silvery flower (tetraploid) 335.008
CNS0095613Golden flower (tetraploid) 120.379
CNS0095614Golden flower (tetraploid) 237.485
CNS0095615Golden flower (tetraploid) 314.099
CRA001975CRR073297Stem 174.920
CRR073298Stem 273.731
CRR073299Stem 373.141
CRR073300Leaf 184.076
CRR073301Leaf 284.128
CRR073302Leaf 3111.415
CRR073303Juvenile bud 1117.326
CRR073304Juvenile bud 295.444
CRR073305Juvenile bud 3102.142
CRR073306Third green 134.781
CRR073307Third green 236.023
CRR073308Third green 335.675
CRR073309Second white 129.297
CRR073310Second white 213.702
CRR073311Second white 39.145
CRR073312Silver flowering 17.243
CRR073313Silver flowering 212.762
CRR073314Silver flowering 39.942
CRR073315Gold flowering 120.584
CRR073316Gold flowering 220.314
CRR073317Gold flowering 316.784
CRR073318Tawny withering 164.220
CRR073319Tawny withering 257.136
CRR073320Tawny withering 363.334