Gene detail

Detail information of GWHGAAZE025641

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007013163.1	0	Site-1 protease, putative isoform 2 [Theobroma cacao]
COG	YP_003382944.1	5E-37	peptidase S8/S53 subtilisin kexin sedolisin
Swissprot	tr\|Q9LNU1\|CRSP_ARATH	0.00000004	CO(2)-response secreted protease {ECO:0000303\|PubMed:25043023} (Precursor)
trEMBL	tr\|A0A061GNR1\|A0A061GNR1_THECC	0	Site-1 protease, putative isoform 2 {ECO:0000313\|EMBL:EOY30782.1}
TAIR10	AT5G19660.1	0	SITE-1 protease

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	65202125	65223820	-
GWHAAZE00000007	mRNA	65202125	65223820	-
GWHAAZE00000007	exon	65202125	65202376	-
GWHAAZE00000007	exon	65202941	65203001	-
GWHAAZE00000007	exon	65203450	65203938	-
GWHAAZE00000007	exon	65204893	65205961	-
GWHAAZE00000007	exon	65207388	65207651	-
GWHAAZE00000007	exon	65209065	65209249	-
GWHAAZE00000007	exon	65216014	65216130	-
GWHAAZE00000007	exon	65218957	65219109	-
GWHAAZE00000007	exon	65219211	65219339	-
GWHAAZE00000007	exon	65221427	65221793	-
GWHAAZE00000007	exon	65223795	65223820	-
GWHAAZE00000007	CDS	65223795	65223820	-
GWHAAZE00000007	CDS	65221427	65221793	-
GWHAAZE00000007	CDS	65219211	65219339	-
GWHAAZE00000007	CDS	65218957	65219109	-
GWHAAZE00000007	CDS	65216014	65216130	-
GWHAAZE00000007	CDS	65209065	65209249	-
GWHAAZE00000007	CDS	65207388	65207651	-
GWHAAZE00000007	CDS	65204893	65205961	-
GWHAAZE00000007	CDS	65203450	65203938	-
GWHAAZE00000007	CDS	65202941	65203001	-
GWHAAZE00000007	CDS	65202285	65202376	-
GWHAAZE00000007	three_prime_UTR	65202125	65202284	-

Transcript Sequence
>GWHTAAZE025675 ATGACTGAAGTGTCTGTCACTCATAGGAATGCTCAAGATCACAAAACCTATCTCGAAGAGAATGTGGAAGCAAAAGGATGGGATTGGATTGAGAGGCGAAATCCTGCGGCTAAGTTTCCCACAGATTTTGGGTTGGTTTCGATCGAGGATTGTGTAAGGGATGTGATGGTGGAGGAGTTTGGGAGATTGGAGTTGGTGAAGGATGTTTGGGCGGATTTGAGCTATCAAAGGAGTTTGCTAGAGAAGGGAAATGGGAGAGTTGGGGCTTTTGTGGATGGGAAGAAGCGGCCGGGGAAGATATTCACTTCAATGTCGTTTAGTGAAGGGGAGAATTATGTGGCTGCTGCTACTAGTAATATGACACTTAGCTGGAAACGCCATCTGTTGATGCAGAAACCTCAAGTTACATCCTTGTTTGGAGCAGATACCCTTTGGTCTAAAGGGTACACTGGTGCAAATGTTAAGATGGCTATATTTGATACAGGCATTCGAGCAAATCACCCACATTTTCGCAATATCAAGGAGCGTACGAACTGGACCAATGAGGATACGCTAAATGACAATCTTGGACACGGGACATTTGTTGCTGGAGTTATTGCCGGTGAAGATGCAGAGTGTCGTGGTTTTGCTCCAGATACAGAGATTTATGCTTTTCGCGTGTTTACTGATGCACAGGTATCATACACGTCGTGGTTCCTTGATGCATTCAACTATGCAATTGCAACTAACATGGATGTGCTTAATTTGAGCATAGGTGGTCCTGATTACTTGGATCTGCCTTTTGTGGAAAAGGTCTGGGAACTTACAGCAAACAATATTATCATGGTTTCAGCAATTGGGAATGATGGACCACTTTATGGTACTCTGAACAACCCAGCAGATCAAAGTGACGTTATTGGTGTTGGTGGTATTGATTACAGCGACCATATAGCCTCATTCTCATCACGCGGTATGAGTACGTGGGAGATTCCTCATGGATATGGACGTGTGAAGCCAGATATTGTTGCATATGGACGTGAAATAATGGGATCGAAGATTAGTACGGGTTGTAAAAGTCTATCCGGTACAAGCGTGGCAAGTCCTGTGGTTGCTGGTATTGTATGCCTTCTTGTTAGTGTAATCCCTCAAAGCCAACGAAAGAGCATTTTAAATCCAGCGAGCATGAAACAAGCTCTAGTTGAAGGGGCTGCAAAGCTTTCCGGTCCAAATATGTATGAACAAGGAGCAGGCAGAGTTGATCTGTTAGAATCGTACGAAATCTTGAAGAGCTACAAACCTCGAGCAAGCATCTTTCCTAGCGTTCTTGATTATACGGATTGCCCCTATTCCTGGCCTTTTTGCCGCCAACCCCTCTATTCCGGTGCAATGCCCGTTACCTTCAACACAACCATTCTAAACGGAATGGGTGTTATTGGCTATATTGCAAGCCCACCCACATGGCACCCTTCAGATGAAGAAGGCAATCTTCTTAGCATTCACTTTACTTATTCTACTGTCATTTGGCCCTGGACTGGTTATTTAGCACTTCACATGCAAATCAAGGAAGAAGGAAATCAGTTTTCCGGAGAAATCGAAGGCAATGTAACATTCAATGTATTCAGCCCACCAGGTCCGGGAGAGACTGCACCTCGAAGTAGTACTTGTGTACTCCGATTGAAATTAAAAGTGGTCCCCACTCCTCCAAGATCCACTAGGGTTCTGTGGGACCAATTTCATAGTATAAAATACCCACCTGGTTATATTCCAAGAGACTCATTGGATGTTCGGAACGACATTCTTGACTGGCATGGGGACCACCTGCACACCAATTTCCATATTATGTTCAACATGTTAAGAGACGCTGGGTACTATGTAGAAACGCTTGGTTCGCCCCTCACATGCTTTGATGCTCTCCACTATGGTACTCTTCTACTGGTGGATCTTGAAGAGGAGTATTTTCCTGAAGAGATTGAAAAGCTGAGAAACGACATAGTTAATACCGGGCTAGGTTTGGCTGTTTTTGCCGAGTGGTATAATGTGGATACGATGGTGAAGATGAGGTTTTTCGATGATAATACAAGGAGCTGGTGGACACCAGTCACTGGTGGAGCAAATATTCCTGCATTGAATGATCTCTTGACCCCATTTGGGATTGCATTTGGGGATAAGATTCTGAATGGTGATTTTTCTATTGATGGGGAACAGAGCCGGTATGCATCTGGAACCGATATAGTGAAATTTCCAGCGGGCGGGTATGTGCATAGCTTCCCATTCTTGGATAGCTCGGAGAGTGGGGCTACTCAGAACATTCTGGTGTCCAGCACGAACAAGGCAGACTCACCAATTCTCGGCCTTTTGGACGCGGGTGGGGCCCGAATTGCTGTCTACGGAGATTCCAACTGTTTGGACAGCAGCCACATGGTCACCAACTGCTACTGGCTTTTGAAGAAAATATTAGATTTCACAAGCAAGAATATTAAAGACACTGTCCTTTTCTCAGATTCCGTTAAACAGGACAAACCCTTGCACCAAAAAGACAGCCAATTACCGTCCCGTAGAACGGATGTTAATTTCTCCATGTATTCTGCTGTCGTTGGTAGAGAATTGATCTGCCGGAACGATTCCAGGTTTGAATTCTGGGGTACTAAGGGCCACGGTCAACAGGTTATTGGCAGAAACCGGAGATTACCCGGGTACCATGATATTGATTTGGATAAAGGTTTAAATTCTACAGCGGAGATTAATGTTAAGAAGGGCTCTAGATTGACTGAAACGAGTAAGGATGGTTCTAAGTACTTTGGTTTACTCTACGGTGACGATATTGACATGCCTGTTCTTGTTGCAACTCACTGGCTTGTACCTGCTATTGTTGCCATTTCTGGACTTCTGCTTCTCTTAAGCTTTTGGCGAATTCGGCAGAAAAGGCGAAGACGGAGGAAAGGATCCGGGCCAGGTCGTTTTGCTAATCCATAGCTCTTTACGGAGATCCCGAGGTAACACATCTCTACTGTAATACTATTAGTATCTACTACACAACCCAATATTAGATAGCCTTCTGACAATTTTGTGCCTATAAACCATCTTCAAGGGAAAGTGAGTTTTTGTATCAATAGCATATGTTTTTGTAGTTATT

Network for GWHGAAZE025641

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00082.23	Peptidase_S8	151	401	1.90E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08653	MBTPS1	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004252	molecular_function	serine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.273
	SRR3591706	second leaf	7.888
	SRR3591707	mature leaf	10.247
	SRR3591708	Shoot apex	11.311
	SRR3591709	Stem	11.389
	SRR3591710	White floral bud	12.527
	SRR3591711	White flower	17.080
	SRR3591712	Green floral bud	11.266
	SRR3591713	Yellow flower	14.378
SRP173429	SRR8316895	Juvenile bud stage	9.084
	SRR8316896	Juvenile bud stage	12.530
	SRR8316897	Juvenile bud stage	6.134
	SRR8316894	Third green stage	4.868
	SRR8316900	Third green stage	13.369
	SRR8316901	Third green stage	12.131
	SRR8316898	Complete white stage	4.903
	SRR8316899	Complete white stage	15.038
	SRR8316903	Complete white stage	9.093
	SRR8316902	Silver flowering stage	6.715
	SRR8316904	Silver flowering stage	11.502
	SRR8316905	Silver flowering stage	4.625
	SRR8316906	Gold flowering stage	14.550
	SRR8316907	Gold flowering stage	14.010
	SRR8316908	Gold flowering stage	14.265
SRP132670	SRR6706286	Control	12.029
	SRR6706287	Light intensity 50%	13.809
	SRR6706288	Light intensity 20%	14.445
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.716
	CNS0095593	Slightly white alabastrum(diploid) 2	12.233
	CNS0095594	Slightly white alabastrum(diploid) 3	11.066
	CNS0095595	Whole white alabastrum(diploid) 2	9.502
	CNS0095596	Whole white alabastrum(diploid) 3	10.098
	CNS0095597	Whole white alabastrum(diploid) 4	10.617
	CNS0095598	Silvery flower (diploied) 1	12.568
	CNS0095599	Silvery flower (diploied) 2	9.370
	CNS0095600	Silvery flower (diploied) 3	14.940
	CNS0095601	Golden flower (diploid) 1	11.242
	CNS0095602	Golden flower (diploid) 2	15.026
	CNS0095603	Golden flower (diploid) 3	13.878
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.275
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.006
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.129
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.049
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.351
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.498
	CNS0095610	Silvery flower (tetraploid) 1	22.986
	CNS0095611	Silvery flower (tetraploid) 2	20.007
	CNS0095612	Silvery flower (tetraploid) 3	20.517
	CNS0095613	Golden flower (tetraploid) 1	15.180
	CNS0095614	Golden flower (tetraploid) 2	19.342
	CNS0095615	Golden flower (tetraploid) 3	16.963
CRA001975	CRR073297	Stem 1	10.673
	CRR073298	Stem 2	11.009
	CRR073299	Stem 3	5.844
	CRR073300	Leaf 1	12.161
	CRR073301	Leaf 2	10.717
	CRR073302	Leaf 3	5.708
	CRR073303	Juvenile bud 1	8.106
	CRR073304	Juvenile bud 2	5.662
	CRR073305	Juvenile bud 3	9.907
	CRR073306	Third green 1	3.954
	CRR073307	Third green 2	3.948
	CRR073308	Third green 3	3.464
	CRR073309	Second white 1	5.759
	CRR073310	Second white 2	6.231
	CRR073311	Second white 3	6.865
	CRR073312	Silver flowering 1	7.205
	CRR073313	Silver flowering 2	5.562
	CRR073314	Silver flowering 3	5.428
	CRR073315	Gold flowering 1	2.914
	CRR073316	Gold flowering 2	7.077
	CRR073317	Gold flowering 3	3.153
	CRR073318	Tawny withering 1	9.840
	CRR073319	Tawny withering 2	9.154
	CRR073320	Tawny withering 3	7.416