Gene detail

Detail information of GWHGAAZE025639

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011043470.1	0	PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
COG	YP_002017974.1	3E-26	serine/threonine protein kinase
Swissprot	tr\|Q9LV48\|PERK1_ARATH	0	Proline-rich receptor-like protein kinase PERK1
trEMBL	tr\|U5FG22\|U5FG22_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP49850.1}
TAIR10	AT3G24550.1	0	proline extensin-like receptor kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	65189499	65192830	+
GWHAAZE00000007	mRNA	65189499	65192830	+
GWHAAZE00000007	exon	65189499	65189994	+
GWHAAZE00000007	exon	65190281	65190367	+
GWHAAZE00000007	exon	65190498	65190568	+
GWHAAZE00000007	exon	65190788	65190864	+
GWHAAZE00000007	exon	65191119	65191266	+
GWHAAZE00000007	exon	65191897	65192058	+
GWHAAZE00000007	exon	65192519	65192830	+
GWHAAZE00000007	CDS	65189499	65189994	+
GWHAAZE00000007	CDS	65190281	65190367	+
GWHAAZE00000007	CDS	65190498	65190568	+
GWHAAZE00000007	CDS	65190788	65190864	+
GWHAAZE00000007	CDS	65191119	65191266	+
GWHAAZE00000007	CDS	65191897	65192058	+
GWHAAZE00000007	CDS	65192519	65192830	+

Transcript Sequence
>GWHTAAZE025673 ATGCCAAAACCGTCTCCTCCACCACCAGTAATGGGATCACGGCCACCCCACTCACCAGTGCGTTCTCCTGCACCTCAACCACCACCGCCACCGCCTTTCATCAACAGCAGTGGTGGTTCCGGCTCCAATTATTCAGGCTATTCAAACCCACTTCCACCACCTTCCCCGGGCATGGCTTTAGGGTTCTCAAAGAGCACATTCACTTATGAAGAATTGGCAATGGCAACAGATGGATTCTCCGATGCAAACCTCCTTGGACAAGGTGGTTTTGGTTATGTCCATAGAGGGGTCCTTCCAAATGGGAAAGAGGTTGCTGTTAAGCAATTGAAAGCCGGTAGTGGGCAGGGTGAGAGGGAATTTCAGGCAGAGGTTGAGATCATTAGCAGGGTGCATCACAAACATCTTGTTTCGTTAGTTGGATACTGCATGACTGGATCAGATAGATTGCTTGTTTATGAGTTTGTTCCAAACAACACCTTGGAGTTCCACTTACATGGAAAGGGGAGACCTGCAATGGATTGGTCCACCAGACTTCGAATTTCTCTCGGGGCTGCAAAGGGACTGGCTTATCTGCACGAGGACTGTCATCCAAAAATCATCCATCGTGATATTAAAGCATCTAATATACTTCTGGATTTTAGCTTTGAGGCAAAGGTTGCGGATTTTGGACTAGCGAAGATTACTTCAGAATTCAATACTCATATCTCCACTCGGGTGATGGGAACTTTTGGGTACTTAGCCCCAGAATATGCTTCTTCAGGGAAACTTACAGAGAAATCTGATGTTTTCTCTTTTGGTGTAATGCTGCTGGAGATGATTACTGGGCGCCGACCTGTTGATACAAATCAAACGTACATGGAAGACAGTTTAGTAGACTGGGCGAGACCCTTGCTAACTCGAGCTCTGGAAGATGGTAACTTTGATACTCTGGTTGATCAGAGGTTGCAAAATGATTACAACAACAATGAGATGGCTCGCATGGTTGCTTGCGCTGCTGCTTGTGTGCGTCATTCAGCAAGGCGTCGACCACGAATGAGCCAGGTCGTTCGCGCATTAGAAGGTGATGTGTCCCTTTCTGATCTCAACGAAGGAATAAGACCGGGACAGAGTACAATGTACAGTTCGCACGGAAGTTCAGATTATGATACTGCCCAATACAACGAGGACATGAAGAAATTCAGAAAAATGGCACTGTCTAGCCAAGAATATGCTAGCAGCGAGTACAGCCGACCCACCAGTGAATATGGGTTGTACCCATCCGGTTCGAGCAGTGAAGGTCAACAAACCAGAGAAATGGAGCTTGGAAAGATGAAAAAAGATAGCCGGGGTTTTAGTGGCGGTTCTCAACTATAG

Network for GWHGAAZE025639

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	84	352	2.90E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.047
	SRR3591706	second leaf	36.778
	SRR3591707	mature leaf	18.694
	SRR3591708	Shoot apex	37.472
	SRR3591709	Stem	68.236
	SRR3591710	White floral bud	31.217
	SRR3591711	White flower	43.198
	SRR3591712	Green floral bud	26.365
	SRR3591713	Yellow flower	38.868
SRP173429	SRR8316895	Juvenile bud stage	50.734
	SRR8316896	Juvenile bud stage	70.557
	SRR8316897	Juvenile bud stage	43.870
	SRR8316894	Third green stage	11.217
	SRR8316900	Third green stage	26.958
	SRR8316901	Third green stage	40.945
	SRR8316898	Complete white stage	7.199
	SRR8316899	Complete white stage	41.034
	SRR8316903	Complete white stage	24.743
	SRR8316902	Silver flowering stage	13.580
	SRR8316904	Silver flowering stage	17.486
	SRR8316905	Silver flowering stage	8.508
	SRR8316906	Gold flowering stage	30.830
	SRR8316907	Gold flowering stage	41.147
	SRR8316908	Gold flowering stage	33.495
SRP132670	SRR6706286	Control	26.596
	SRR6706287	Light intensity 50%	27.576
	SRR6706288	Light intensity 20%	28.259
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.146
	CNS0095593	Slightly white alabastrum(diploid) 2	55.426
	CNS0095594	Slightly white alabastrum(diploid) 3	46.575
	CNS0095595	Whole white alabastrum(diploid) 2	35.682
	CNS0095596	Whole white alabastrum(diploid) 3	13.610
	CNS0095597	Whole white alabastrum(diploid) 4	29.048
	CNS0095598	Silvery flower (diploied) 1	53.082
	CNS0095599	Silvery flower (diploied) 2	54.292
	CNS0095600	Silvery flower (diploied) 3	40.345
	CNS0095601	Golden flower (diploid) 1	47.609
	CNS0095602	Golden flower (diploid) 2	51.858
	CNS0095603	Golden flower (diploid) 3	49.781
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.362
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.365
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.355
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.720
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.123
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.354
	CNS0095610	Silvery flower (tetraploid) 1	20.802
	CNS0095611	Silvery flower (tetraploid) 2	18.225
	CNS0095612	Silvery flower (tetraploid) 3	31.065
	CNS0095613	Golden flower (tetraploid) 1	16.526
	CNS0095614	Golden flower (tetraploid) 2	19.341
	CNS0095615	Golden flower (tetraploid) 3	15.666
CRA001975	CRR073297	Stem 1	63.357
	CRR073298	Stem 2	51.496
	CRR073299	Stem 3	59.874
	CRR073300	Leaf 1	48.345
	CRR073301	Leaf 2	60.795
	CRR073302	Leaf 3	31.809
	CRR073303	Juvenile bud 1	35.481
	CRR073304	Juvenile bud 2	27.365
	CRR073305	Juvenile bud 3	45.205
	CRR073306	Third green 1	28.149
	CRR073307	Third green 2	27.268
	CRR073308	Third green 3	27.325
	CRR073309	Second white 1	34.247
	CRR073310	Second white 2	28.835
	CRR073311	Second white 3	33.928
	CRR073312	Silver flowering 1	48.110
	CRR073313	Silver flowering 2	46.996
	CRR073314	Silver flowering 3	44.356
	CRR073315	Gold flowering 1	11.657
	CRR073316	Gold flowering 2	28.440
	CRR073317	Gold flowering 3	17.842
	CRR073318	Tawny withering 1	73.439
	CRR073319	Tawny withering 2	92.436
	CRR073320	Tawny withering 3	77.900