Gene detail

Detail information of GWHGAAZE025623

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006363637.1	0	PREDICTED: ARF guanine-nucleotide exchange factor GNL2-like [Solanum tuberosum]
COG	YP_007567780.1	3E-30	RalF protein, translocated into host cells by the Dot/Icm system
Swissprot	tr\|F4K2K3\|GNL2_ARATH	0	ARF guanine-nucleotide exchange factor GNL2
trEMBL	tr\|M1ACL3\|M1ACL3_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400019795}
TAIR10	AT5G19610.1	0	GNOM-like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	64766304	64775857	-
GWHAAZE00000007	mRNA	64766304	64775857	-
GWHAAZE00000007	exon	64775610	64775857	-
GWHAAZE00000007	exon	64772385	64772720	-
GWHAAZE00000007	exon	64770493	64770962	-
GWHAAZE00000007	exon	64766304	64769406	-
GWHAAZE00000007	five_prime_UTR	64775850	64775857	-
GWHAAZE00000007	CDS	64775610	64775849	-
GWHAAZE00000007	CDS	64772385	64772720	-
GWHAAZE00000007	CDS	64770493	64770962	-
GWHAAZE00000007	CDS	64766304	64769406	-

Transcript Sequence
>GWHTAAZE025657 AACCAAAAATGGGTAATAACCAAGACGAAGAAGATGAAACTAAAAACAACAAATTAAACAAAATCAAGAAAAGCAAGGAGCTCGGAATCTCATGCATGCTCAACACCGAGGTCGGTGCTGTTCTTGCCGTCATTCGCCGGAAAACTGATTTCTATCCCCAGTACATTCACCCACCGGATGAAACTTTCGATTCCTCGATTCTACACTCATTGAAGACCCTTAGATCCCTAATTTTCAATCCACAACAGGAATGGCGAAGGATCGATCCATCTCTATACCTATCTCCGTTCTTGGATGTTATACAGAGCGACGACGTTCCGGCAGCCGCCACCGGCGTGGCGCTGTCGTCGGTGCTGAAGATATTCCGGCTGCAGGTCTTCGACGAGAAGACACCCGGGGCTAAGGATGCTATCGGAGAGGCGGTGACTGCAGTTACTGGATGTAGGTTGGAGAAGACGGATCCGGTATCGGAGGATGCGGTGATGATGAGGATTTTGCTGGTTCTGTCGGCGATTATGAGGCACCGAGCTTCCTGTTTGCTCACAGATCATGGTGTTTGCACCCTTGTCAATTCTTGCTTTCAGGTTGTTCAACAATCAGCCAGTCGAGGCGACCTGCTCCAGCGCTGTGCACGGTTCACAATGCACGAGCTCATCCAAATAATATACTCTCGGTTACCCGATATAGAAGTGAGAGACTGGGAAAACTCGGAATCTGATACTGAGGACAGTGGGCTTGATTCGGTTTATGGTATCCGATCCGCTGTTGATATATTCCATTTCCTGTGTTCTTTATTGAATGTAGTTGAAGTGTTTGATGTTGAAGGGTCATCAACGGCTCAAACCGTCGATGAAGATGTTCAGCTTTTCGCTCTTGTTTTGATCAACTCAGCGATTGAGTTGAGTGGTGATAGTATTGGGAAGCACCCGAAGCTTTTGCGGATGGTTCAAGATGATCTTTTTCACCATTTGATTCATTACGGGATGTGCTCGACCCCACTAATTTTGTCGATGATTTGTAGTACTGTTTTGAATATCTACCACTTTCTTCGCAGCTCTGTTCGGCTTCAATTGGAAGCTTTCTTCTCATTTGTGTTATTTAGAACAGCAAATTTGGCTAGTGTCCAACCTCAAGAAGTTGCGGTAGAAGGTATAATAAATTTCTGCAGGCAACCAACATTTATAGTCGAAGTCTACGTAAATTACGATTGTGACCCCACTTTTCGAAATGTATTTGAAGAGATTGGCAAGTTGCTGTGCAAGCACGCATTTCCAGCTGTTGACCGTTTAACGAGTTTACAAATCCAAGCCTTTGAAGGACTTGTACTCATACTTCACAACATTGCTGATAATGTTGACAAAGAAGATGATTCAAGCCCATCTGGGCCCTACCCAGTTGAAATTTCTGAGTACAGACCATTTTGGGAAGAGAAAACGAAGGAACACGAAGATTTTAAAACTTGGGTCGATTTCGTGAGAGTGAGAAAGGCACAAAAAAGGAAGATAATGATAGCAAGTAACCATTTTAATCGCGATCTTAAAAAGGGGCTAGATTATTTGAAAATATGTGATTTGGTCTCCAATCCACCTAATCCGAAAGCGTATGCTATGTTTTTTCATTACACTCCGGGTCTTGACAAGACCATGATCGGAGATTATCTTGGTGACCCGGATGAATTTCATATTCAAGTTCTTAAAGAATTTACCGACACATTTGAATTTAGTGGAATGATTCTTGATACCGCTTTGAGAACTTATTTGGAAACTTTTCGATTACCTGGCGAATCTCAAAAGATTCAAAGAATACTTGAAGCTTTCTCTGAGAAGTTTTATGATCAACAATCGTCAGAGATTTTTGTTAGCAAAGATTCAGTTTTCATTTTATGTTACTCCCTCATTATGCTAAATACAGATCAACACAATCCGCAAGTGAAGAAAAAGATGACTGAAGATGAGTTTATAAGAAACAACAGAGCCATTAATGGTGGTAAAGATCTTCCTCGAGAGTACTTATCAGAATTGTTTCATTCAATTTCGACCAACGCCATCACACTCTTTGGCCAAACCGGTGCGCCCATGGAAATGAATCCGAGCCGTTGGATTCAACTGATAAATCGTGCCAAAATCATGAAGCCATTCGCGTTGTGTGATTACGAACGCTGTTTGGGGAGAGATATGTTTGCTGCTATTGCGGGTCCCTCCGTTGCTACGCTTTCGGCTATATTTGAGCAATCCGACGATGAAGAAATGTTACACGAATGCATCGAGGCTTTGTTTTCGGTATCAAGAATTGCTCAATACGGGCTAGAGGACACTTTAGATGAGCTCCTCGCTTCGTTTTGCAAATTTACTACTTTATTGAATCCTTATGCATCCGCAGAAGAAACACTTTATGCTTTTAGCAACGATATGAAACCTAGAATGGCAACTTTAGCTGTTTTTACTATTGCAAATGGTTTCAAAGACTCGATTCGAGGGGGTTGGAGGATAATTATCGACTGTTTGTTGAAACTCAAGAAGCTAAAATTGCTTCCCCAATCCGTGGTGGAGCCTGAAATTGCTTCAGCTTCATCTCTCGACAATCAAATGAGCGAACAGTCTGAATCAGGCTCGATTTTTCCTGGTCAGGATATTAAAAAATTAGGCAGTAAACACCATGGTGCCAGTATGATGGACCGATTCTCGCATTTTTTATCAATGGAGAGCGTCGAAGAGTCATTAAACCTTGGTGTGAGTGAGTTTGAGCAAAATTTGAAAGTTATTCAACAATGTCGAATCGGTTCCATTTTCAGCAATAGTTCGACTTTGCCTGAAGATCCTTTGTTAAACCTTGGCCGCTCTCTCATCTTTGCCGCGGCTGGTAAAGGCCAAAAATTTAGTACACCAGTTGAGGAAGAAGAAACTGTTGGATTTTGTTGGGATTTACTTTTAGCAATTAGTGTAGCCAACATCCATAGATTCACAACATTTTGGCCTCATTATAATGATTTTCTTCTTGGGGTTGCGCAGTTTCCACTATTTTCACCTATTCCATTTGCCGAAAAGGGGATCATAGCGCTTATGAAGATTTGTCTCAAGCTTTTAGCTTCGTACCAGTCGGAAAAACTCCCCGAGGAACTCATCTTCAAGTCCATAAACTTAATGTGGAAGCTTGAAAAAGAAATCCTCGACACTTGTTGCGAGTTCTTAACCCAATCGGTGAGCAAAATTCTCATTGAATATCCTGCAAATTTGCAAACAAGGTTGGGGTGGAAATCTGTTCTTCACCTTTTGTCAGTCACCGGACGGCACCAAGAAACGTACGACCAAGGGGTTGAGACGCTTATCATGTTGATGTCTGACGGAATCCACATCTCTTTAACAAATTATGCATATTGTATTGATTGCGCATTCGGTTTCGTTGCTCTAAGAAATAGCCCAGTGGACAAGAACATCAAGATAATGGACCACATGGCGGATTCGGTGAACCTCTTGGTTCAATGGTACAAGAATGGATATTCGGATCCGGGTATTACCATGAGCAACATGAGTAGTTCCTCGATCGAAGATAATAATATGAAAGCTCTCAACTCGTCCAATATGACCATGAACTTGTTTTTGAAGTTAGGTGAATCTTTGAGAAAGACGAGCTTGGCTAGGCGAGAGGAGATAAGGAACCATGCGATTGGCTCTCTCCAAAGAAGCTTTGCGCTTGCCGAGGAGCTTTACTTTATGCCCACAAATTGCATCAATTGCTTCAACCTTGTGATCTTCTCGATGGTGGACGATTTGCATGAGAAAATGTTGGAGTACTCGAGGAGAGGAAATGCAGATAGAGAGACCAGGAGCATGGAGGGGACTTTGAAGCTATCGATGGAGCTATTGGCCGAGGTTTATTTGCAGCTTTTGAAACCGATATCGGAGAGTCCCGATTTTAGAACATTTTGGTTGGGGATTTTGAGGAGGATGGATACGTGTATGAAGGCTGATTTAGGATATTATGGTGAATCAACATTGCAAGAAATTGTACCTGGTTTGTTGAGGAAGATGATCACAACAATGAAGGAGAATGAGATATTGGTGCAAAGGGAAGGTGATGATTTGTGGGAAATTACTTATATTCAGATACAATGGATTGCTCCATCGATTAAGGAAGAGTTGTTTCCTGAAGAAATGTAG

Network for GWHGAAZE025623

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12783.8	Sec7_N	250	408	3.80E-28
PF01369.21	Sec7	495	680	5.20E-68

Protein Sequence

>GWHPAAZE025641
MGNNQDEEDETKNNKLNKIKKSKELGISCMLNTEVGAVLAVIRRKTDFYPQYIHPPDETFDSSILHSLKTLRSLIFNPQQEWRRIDPSLYLSPFLDVIQSDDVPAAATGVALSSVLKIFRLQVFDEKTPGAKDAIGEAVTAVTGCRLEKTDPVSEDAVMMRILLVLSAIMRHRASCLLTDHGVCTLVNSCFQVVQQSASRGDLLQRCARFTMHELIQIIYSRLPDIEVRDWENSESDTEDSGLDSVYGIRSAVDIFHFLCSLLNVVEVFDVEGSSTAQTVDEDVQLFALVLINSAIELSGDSIGKHPKLLRMVQDDLFHHLIHYGMCSTPLILSMICSTVLNIYHFLRSSVRLQLEAFFSFVLFRTANLASVQPQEVAVEGIINFCRQPTFIVEVYVNYDCDPTFRNVFEEIGKLLCKHAFPAVDRLTSLQIQAFEGLVLILHNIADNVDKEDDSSPSGPYPVEISEYRPFWEEKTKEHEDFKTWVDFVRVRKAQKRKIMIASNHFNRDLKKGLDYLKICDLVSNPPNPKAYAMFFHYTPGLDKTMIGDYLGDPDEFHIQVLKEFTDTFEFSGMILDTALRTYLETFRLPGESQKIQRILEAFSEKFYDQQSSEIFVSKDSVFILCYSLIMLNTDQHNPQVKKKMTEDEFIRNNRAINGGKDLPREYLSELFHSISTNAITLFGQTGAPMEMNPSRWIQLINRAKIMKPFALCDYERCLGRDMFAAIAGPSVATLSAIFEQSDDEEMLHECIEALFSVSRIAQYGLEDTLDELLASFCKFTTLLNPYASAEETLYAFSNDMKPRMATLAVFTIANGFKDSIRGGWRIIIDCLLKLKKLKLLPQSVVEPEIASASSLDNQMSEQSESGSIFPGQDIKKLGSKHHGASMMDRFSHFLSMESVEESLNLGVSEFEQNLKVIQQCRIGSIFSNSSTLPEDPLLNLGRSLIFAAAGKGQKFSTPVEEEETVGFCWDLLLAISVANIHRFTTFWPHYNDFLLGVAQFPLFSPIPFAEKGIIALMKICLKLLASYQSEKLPEELIFKSINLMWKLEKEILDTCCEFLTQSVSKILIEYPANLQTRLGWKSVLHLLSVTGRHQETYDQGVETLIMLMSDGIHISLTNYAYCIDCAFGFVALRNSPVDKNIKIMDHMADSVNLLVQWYKNGYSDPGITMSNMSSSSIEDNNMKALNSSNMTMNLFLKLGESLRKTSLARREEIRNHAIGSLQRSFALAEELYFMPTNCINCFNLVIFSMVDDLHEKMLEYSRRGNADRETRSMEGTLKLSMELLAEVYLQLLKPISESPDFRTFWLGILRRMDTCMKADLGYYGESTLQEIVPGLLRKMITTMKENEILVQREGDDLWEITYIQIQWIAPSIKEELFPEEM

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18443	GBF1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	biological_process	regulation of ARF protein signal transduction
GO:0005086	molecular_function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.561
	SRR3591706	second leaf	4.357
	SRR3591707	mature leaf	4.389
	SRR3591708	Shoot apex	6.085
	SRR3591709	Stem	5.206
	SRR3591710	White floral bud	9.994
	SRR3591711	White flower	5.019
	SRR3591712	Green floral bud	24.952
	SRR3591713	Yellow flower	3.038
SRP173429	SRR8316895	Juvenile bud stage	3.977
	SRR8316896	Juvenile bud stage	13.624
	SRR8316897	Juvenile bud stage	6.822
	SRR8316894	Third green stage	6.469
	SRR8316900	Third green stage	23.603
	SRR8316901	Third green stage	23.975
	SRR8316898	Complete white stage	1.240
	SRR8316899	Complete white stage	4.872
	SRR8316903	Complete white stage	2.257
	SRR8316902	Silver flowering stage	1.054
	SRR8316904	Silver flowering stage	1.187
	SRR8316905	Silver flowering stage	0.672
	SRR8316906	Gold flowering stage	1.867
	SRR8316907	Gold flowering stage	1.548
	SRR8316908	Gold flowering stage	1.402
SRP132670	SRR6706286	Control	11.387
	SRR6706287	Light intensity 50%	11.444
	SRR6706288	Light intensity 20%	11.037
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.887
	CNS0095593	Slightly white alabastrum(diploid) 2	13.536
	CNS0095594	Slightly white alabastrum(diploid) 3	15.993
	CNS0095595	Whole white alabastrum(diploid) 2	22.405
	CNS0095596	Whole white alabastrum(diploid) 3	28.985
	CNS0095597	Whole white alabastrum(diploid) 4	21.157
	CNS0095598	Silvery flower (diploied) 1	2.224
	CNS0095599	Silvery flower (diploied) 2	1.678
	CNS0095600	Silvery flower (diploied) 3	2.208
	CNS0095601	Golden flower (diploid) 1	1.432
	CNS0095602	Golden flower (diploid) 2	2.517
	CNS0095603	Golden flower (diploid) 3	2.218
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.887
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.466
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.940
	CNS0095607	Whole white alabastrum(tetraploid) 1	47.385
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.087
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.254
	CNS0095610	Silvery flower (tetraploid) 1	1.879
	CNS0095611	Silvery flower (tetraploid) 2	2.092
	CNS0095612	Silvery flower (tetraploid) 3	3.868
	CNS0095613	Golden flower (tetraploid) 1	1.301
	CNS0095614	Golden flower (tetraploid) 2	1.415
	CNS0095615	Golden flower (tetraploid) 3	2.400
CRA001975	CRR073297	Stem 1	8.778
	CRR073298	Stem 2	9.737
	CRR073299	Stem 3	3.640
	CRR073300	Leaf 1	16.319
	CRR073301	Leaf 2	14.867
	CRR073302	Leaf 3	8.232
	CRR073303	Juvenile bud 1	8.278
	CRR073304	Juvenile bud 2	5.892
	CRR073305	Juvenile bud 3	0.957
	CRR073306	Third green 1	1.375
	CRR073307	Third green 2	1.502
	CRR073308	Third green 3	1.478
	CRR073309	Second white 1	0.219
	CRR073310	Second white 2	0.747
	CRR073311	Second white 3	0.897
	CRR073312	Silver flowering 1	1.469
	CRR073313	Silver flowering 2	1.067
	CRR073314	Silver flowering 3	0.824
	CRR073315	Gold flowering 1	2.197
	CRR073316	Gold flowering 2	1.945
	CRR073317	Gold flowering 3	0.315
	CRR073318	Tawny withering 1	3.066
	CRR073319	Tawny withering 2	3.391
	CRR073320	Tawny withering 3	2.580