Gene detail

Detail information of GWHGAAZE025591

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656380.1	0	PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Vitis vinifera]
Swissprot	tr\|Q93YV6\|2A5I_ARATH	0	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform
trEMBL	tr\|D7TBU2\|D7TBU2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28127.3}
TAIR10	AT5G25510.1	5E-167	Protein phosphatase 2A regulatory B subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	63960928	63966170	-
GWHAAZE00000007	mRNA	63960928	63966170	-
GWHAAZE00000007	exon	63965007	63966170	-
GWHAAZE00000007	exon	63960928	63961302	-
GWHAAZE00000007	CDS	63965007	63966170	-
GWHAAZE00000007	CDS	63960928	63961302	-

Transcript Sequence
>GWHTAAZE025625 ATGCTTAAGCAAATTCTGGCAAAACTCCCTCGGAAAACTTCGAAATCTAATCCAGTAGATTCTGCTGGAAGTAGTTCCAACAATGATACAATCGACATAAACAATGGATTTCAATTTACCAACAGTTGCAGTGTCATTTCAAGTCGATTGAACGTCGTTAAAAGAATGTCTTCCTCTATTTTCCCCACTAGCATCTCGGCTGGAAACGAAATGATCGACCCTCATGTACCATTCAATGATGTTTCAAATTCGGACAAACAGAGGCTTTTTATCAGCAAATTGAATCTATGCTCTTCGGTATACGATTTTACCGACCCAAATGAAAAATCGTCGGAGAAAGATCTCAAGCGGAAAATACTAATTGAGCTCCTTGATTTTCTTGCTTCAAACTCTGCAAAATTTAGCGAACCAACGATTGACGCCATGTGTAAAATGTGTGCAAATAATCTCTTTAGAGATTTTCCTCCAAAATATCCATCTAATTGTACTCGGGGAGAAAACGAAGATGATGAACCTTTGTTCGATCCGGCGTGGACTCATTTGCAGCTCGTTTACGACATTCTCCTTCAATTCTTGAGTTACAATTCACTCGACGTAAAAGTAGCAAAAAAGTACGTGGATCATTCTTTTATATTAAGATTGCTCAATCTATTTGAGTCTGAGGATCCCAGAGAAAGAGACTGTTTAAAATCGGTTCTTCATCGGGTTTATGGCAAGTTTATGGTACACAGGCCATTTATCAGAATGGCAGTGAGCAATATAATTTACCGTTTTGTATTCGAAACAGAGCGGCATAGCGGTATTGCCGAGTTGTTGGAGATATTTGGGAGTGTAATAAGTGGGTTTGCTTTGCCATTGAAGAAAGAGCACAAAATGTTCTTGCTTAGGGTTTTAATTCCTCTCCACAAACCGAAATCGGTGGGTGTTTATCATCAACAATTGACGTATTGTATTGTACAGTTTGTAGAAAAGGAGCCGAAGTTGGCCGGTACTGTGATAAAGGGACTATTGAAGTACTGGCCAGTAACGAGTAGCCAAAAGCAGTTGATGTTCTTGAGCGAGTTGGAAGAGCTTCTTGAAATGATTAACATGGAAGAGTTTGAAACGATAATGGTACCTTTGTTTCGGCGTATTGGGTGTTGCCTCAACAGCTCTCATTTTCAGGTGGCCGAGCGTGCACACTTCCTATGGAACAACGAACGTATACTTCAACTTATCAAGCATAACCGACAGGTGATCATGCCACTTGTCTTCTCAGCATTGGAGCGAAACACGCAGAATCACTGGCACCGGGCTGTGCTCAACTTGACGCAAAATGTGAGGAACATGTTCCGAGAGATGGATGAAGAGCTTGCACTTGCATGCCAAGGAAAATTTGAGGAGGAAAACTTGAAATCTACTGTTGTATCGGAAAGGCGGAGATTGACATGGGAGCGCCTCGAAACTGCTGCTGGTGCAGGTTTCCGACCCGCGGCCGGTGGTGGTGGGGGGGTCTCAGGCTTGGAAAATGCCACCGCCGCATGCATTGTTTCATGCTAA

Network for GWHGAAZE025591

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01603.21	B56	77	484	2.10E-168

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11584	PPP2R5	mRNA surveillance pathway	map03015
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0000159	cellular_component	protein phosphatase type 2A complex
GO:0019888	molecular_function	protein phosphatase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.451
	SRR3591706	second leaf	18.970
	SRR3591707	mature leaf	10.899
	SRR3591708	Shoot apex	30.228
	SRR3591709	Stem	47.427
	SRR3591710	White floral bud	23.010
	SRR3591711	White flower	23.272
	SRR3591712	Green floral bud	31.246
	SRR3591713	Yellow flower	12.967
SRP173429	SRR8316895	Juvenile bud stage	13.739
	SRR8316896	Juvenile bud stage	13.920
	SRR8316897	Juvenile bud stage	6.510
	SRR8316894	Third green stage	9.569
	SRR8316900	Third green stage	25.506
	SRR8316901	Third green stage	26.540
	SRR8316898	Complete white stage	11.782
	SRR8316899	Complete white stage	38.336
	SRR8316903	Complete white stage	19.781
	SRR8316902	Silver flowering stage	8.533
	SRR8316904	Silver flowering stage	12.469
	SRR8316905	Silver flowering stage	4.337
	SRR8316906	Gold flowering stage	13.760
	SRR8316907	Gold flowering stage	13.444
	SRR8316908	Gold flowering stage	12.626
SRP132670	SRR6706286	Control	18.435
	SRR6706287	Light intensity 50%	21.012
	SRR6706288	Light intensity 20%	23.794
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.636
	CNS0095593	Slightly white alabastrum(diploid) 2	19.056
	CNS0095594	Slightly white alabastrum(diploid) 3	16.921
	CNS0095595	Whole white alabastrum(diploid) 2	17.082
	CNS0095596	Whole white alabastrum(diploid) 3	16.367
	CNS0095597	Whole white alabastrum(diploid) 4	13.980
	CNS0095598	Silvery flower (diploied) 1	16.405
	CNS0095599	Silvery flower (diploied) 2	13.828
	CNS0095600	Silvery flower (diploied) 3	21.752
	CNS0095601	Golden flower (diploid) 1	11.844
	CNS0095602	Golden flower (diploid) 2	19.269
	CNS0095603	Golden flower (diploid) 3	19.229
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.857
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.783
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.448
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.397
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.685
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.234
	CNS0095610	Silvery flower (tetraploid) 1	14.999
	CNS0095611	Silvery flower (tetraploid) 2	17.424
	CNS0095612	Silvery flower (tetraploid) 3	11.280
	CNS0095613	Golden flower (tetraploid) 1	6.415
	CNS0095614	Golden flower (tetraploid) 2	13.480
	CNS0095615	Golden flower (tetraploid) 3	9.809
CRA001975	CRR073297	Stem 1	24.292
	CRR073298	Stem 2	24.229
	CRR073299	Stem 3	24.976
	CRR073300	Leaf 1	31.016
	CRR073301	Leaf 2	30.135
	CRR073302	Leaf 3	25.347
	CRR073303	Juvenile bud 1	29.749
	CRR073304	Juvenile bud 2	24.683
	CRR073305	Juvenile bud 3	37.958
	CRR073306	Third green 1	15.103
	CRR073307	Third green 2	15.656
	CRR073308	Third green 3	16.078
	CRR073309	Second white 1	14.320
	CRR073310	Second white 2	11.086
	CRR073311	Second white 3	7.773
	CRR073312	Silver flowering 1	6.423
	CRR073313	Silver flowering 2	5.486
	CRR073314	Silver flowering 3	6.834
	CRR073315	Gold flowering 1	8.879
	CRR073316	Gold flowering 2	11.351
	CRR073317	Gold flowering 3	10.768
	CRR073318	Tawny withering 1	35.925
	CRR073319	Tawny withering 2	20.539
	CRR073320	Tawny withering 3	34.563