Gene detail

Detail information of GWHGAAZE025581

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010098956.1	0	putative inactive receptor kinase [Morus notabilis]
COG	YP_004429344.1	7E-22	leucine-rich repeat-containing protein
Swissprot	tr\|O48788\|Y2267_ARATH	0	Probable inactive receptor kinase At2g26730 (Precursor)
trEMBL	tr\|W9RGY2\|W9RGY2_9ROSA	0	Putative inactive receptor kinase {ECO:0000313\|EMBL:EXB76258.1}
TAIR10	AT2G26730.1	2E-154	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	63827643	63831625	-
GWHAAZE00000007	mRNA	63827643	63831625	-
GWHAAZE00000007	exon	63827643	63828310	-
GWHAAZE00000007	exon	63830332	63831625	-
GWHAAZE00000007	CDS	63830332	63831625	-
GWHAAZE00000007	CDS	63827643	63828310	-

Transcript Sequence
>GWHTAAZE025615 ATGGCACTCTTCTTTGCTCTATTTTACACTTTAATTCTCTTCTCACCCACTCACCGAGCCAACTCTGAACTCACCCAAGACAAGCAAGCTCTCCTTGCTTTCCTCTCCCAAGTCCCTCACGAAACTCGCCTCCAATGGAATTCCACCGATTCCCCTTGCAATTGGGTCGGCGTCGGCTGCGACCCCGCCCTAAACTCCGTTTACTACCTCCGCCTCCCCGGTGTAGGCCTCGTCGGACAAATTCCTCCCCGCACAATCGGCAACCTCACCGACCTCCGTGTTCTCAGTCTCCGTTCCAATAGACTCTCCGGCCAGATCCCCTCCGATTTTTCCAACCTCAAATCCATCCGAAGCATTTATTTGCAGGACAACGAGTTCTCCGGCGAGTTCCCCACCACTCTGACCGAGTTAACTCGGTTGACTCGTTTAGATCTGTCTTCCAACAACTTAACTGGTACAGTCCCATTTACGCTCAACAATCTCACTCACTTGACTGGATTGTTTTTACAGAACAATGATTTTCACGGCTCACTCCCCAGTATTGCTCAACCTTTGGTGGATTTCAATGTATCCAACAATCGCCTCAACGGTTCAATTCCAGCCACTCTGAGCAGATTTCCCTCATCAGCATTCATGGGAAACCTTGATCTCTGCGGAGGGCCGCTGCCGCCGTGCTCCCCGTTCTTCCCTGCCCCGGAACCGTCACCGTCTTCTGTGACACCGCTCAGTCCGGCTCGCAAATCGAGAAAGCTCTCCAAGGCGGCAATAATAGGAATATCAGTTGGAGCAGCTGTATTACTACTAGTGTTACTACTAATTTTATTCTTGTGTCTGATCGGAATTCGTCGTCGGTCCCAATCCCGGAAAAGTCCGAAACCTACCGCAGCAACGAGGTCTGTTGGGGCGGTAGGGGAGGCGGGGACTTCGTCCTCGAAGGACGACATAACCGGGGGCTCTGCCGAGGCCGGAGGGGAGAGGAACAAGTTAATGTTCTTCGATGGTGGGATTTATAGTTTCGATTTGGAGGATCTGTTGAGGGCGTCGGCCGAGGTTTTGGGGAAAGGTTCGGTGGGAACGTCGTACAAGGCGGTGCTGGAGGAAGGGACGACGGTGGTGGTGAAGAGATTGAAAGACGTGGTGGTTTCGAAGAAGGAATTCGATACGCAAATGGAGGTTTTGGGGAAGGTTAAAGATGAAAATGTGGTGCCACTTAGAGCTTATTATTATTCCAAGGATGAAAAATTGCTTGTTTATGATTATATGCCTGCTGGTAGCTTATCTGCTCTTCTTCATGGAAGCCGAGGATCCGGCCGGACTCCCCTGGACTGGGACAGTCGGATGAGAATTGCGACAAATGCCGCCAAGGGCCTTGCCCACCTCCACATGGCAGCAAAAGTGGTCCATGGAAACATCAAATCGTCCAACATCCTCCTTCGGCAAGACAATCACCAAGATGCCGCTGCAGTTTCGGACTTTGGGCTCAACTCTCTCTTCGGCGGTACAAGTCCCCCGAATCACCGGCTCGCCGGCTACCGTGCCCCCGAAGTCCTTGAAACTCGCAAGGTCACTTTCAAATCTGATGTGTACAGCTTCGGGGTCCTCTTACTAGAGCTCCTAACGGGGAAGGCCCCAAATCAAGCCTCCCTCGGGGAGGAAGGGATTGACTTGCCCCGGTGGGTCCAGTCGGTGGTTAGGGAGGAATGGACTGCTGAGGTTTTTGACGCTGAGTTGTTGAGGTTCCACAACATTGAAGAAGAGATGGTGCAGCTCTTGCAGATTGCAATGGCTTGTGTTGCAACAGTGCCCGATCAACGCCCGGGAATGCCAGACGTAGTGAAGATGATGGAAGATATCAATAGATCGGAAACGGAAGATGGGTTACATCAGTCGTCGGATGATCCATCCAAGGGATCGGACGGTCAGACTCCTCCATCAGAGTCCCGGGCACCTATCACACCTTAG

Network for GWHGAAZE025581

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	61	7.30E-09
PF13855.7	LRR_8	78	125	2.00E-07
PF00069.26	Pkinase	349	613	6.30E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.326
	SRR3591706	second leaf	34.770
	SRR3591707	mature leaf	17.118
	SRR3591708	Shoot apex	33.623
	SRR3591709	Stem	17.034
	SRR3591710	White floral bud	13.533
	SRR3591711	White flower	6.944
	SRR3591712	Green floral bud	42.055
	SRR3591713	Yellow flower	0.744
SRP173429	SRR8316895	Juvenile bud stage	20.970
	SRR8316896	Juvenile bud stage	22.103
	SRR8316897	Juvenile bud stage	9.786
	SRR8316894	Third green stage	12.671
	SRR8316900	Third green stage	26.646
	SRR8316901	Third green stage	30.788
	SRR8316898	Complete white stage	1.895
	SRR8316899	Complete white stage	32.499
	SRR8316903	Complete white stage	4.356
	SRR8316902	Silver flowering stage	0.670
	SRR8316904	Silver flowering stage	0.917
	SRR8316905	Silver flowering stage	0.594
	SRR8316906	Gold flowering stage	0.481
	SRR8316907	Gold flowering stage	0.291
	SRR8316908	Gold flowering stage	0.850
SRP132670	SRR6706286	Control	33.366
	SRR6706287	Light intensity 50%	40.031
	SRR6706288	Light intensity 20%	45.850
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.463
	CNS0095593	Slightly white alabastrum(diploid) 2	32.371
	CNS0095594	Slightly white alabastrum(diploid) 3	20.833
	CNS0095595	Whole white alabastrum(diploid) 2	21.519
	CNS0095596	Whole white alabastrum(diploid) 3	21.078
	CNS0095597	Whole white alabastrum(diploid) 4	22.605
	CNS0095598	Silvery flower (diploied) 1	16.782
	CNS0095599	Silvery flower (diploied) 2	9.045
	CNS0095600	Silvery flower (diploied) 3	3.450
	CNS0095601	Golden flower (diploid) 1	7.571
	CNS0095602	Golden flower (diploid) 2	4.771
	CNS0095603	Golden flower (diploid) 3	5.067
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.658
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.164
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.523
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.343
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.266
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.207
	CNS0095610	Silvery flower (tetraploid) 1	1.594
	CNS0095611	Silvery flower (tetraploid) 2	3.259
	CNS0095612	Silvery flower (tetraploid) 3	2.293
	CNS0095613	Golden flower (tetraploid) 1	0.226
	CNS0095614	Golden flower (tetraploid) 2	2.399
	CNS0095615	Golden flower (tetraploid) 3	0.765
CRA001975	CRR073297	Stem 1	77.653
	CRR073298	Stem 2	74.763
	CRR073299	Stem 3	106.442
	CRR073300	Leaf 1	86.937
	CRR073301	Leaf 2	74.962
	CRR073302	Leaf 3	67.609
	CRR073303	Juvenile bud 1	76.588
	CRR073304	Juvenile bud 2	46.815
	CRR073305	Juvenile bud 3	108.266
	CRR073306	Third green 1	3.509
	CRR073307	Third green 2	4.125
	CRR073308	Third green 3	5.598
	CRR073309	Second white 1	0.292
	CRR073310	Second white 2	1.027
	CRR073311	Second white 3	0.583
	CRR073312	Silver flowering 1	0.202
	CRR073313	Silver flowering 2	0.756
	CRR073314	Silver flowering 3	0.601
	CRR073315	Gold flowering 1	20.459
	CRR073316	Gold flowering 2	22.880
	CRR073317	Gold flowering 3	22.868
	CRR073318	Tawny withering 1	50.692
	CRR073319	Tawny withering 2	35.867
	CRR073320	Tawny withering 3	49.881