Gene detail

Detail information of GWHGAAZE025577

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010254263.1	5.5258E-151	PREDICTED: probable transcription factor GLK2 [Nelumbo nucifera]
Swissprot	tr\|Q94DH3\|PCL1_ORYSJ	3E-13	Transcription factor PCL1
trEMBL	tr\|B9STM7\|B9STM7_RICCO	2E-143	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF33013.1}
TAIR10	AT2G03500.1	9E-57	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	63771375	63773307	+
GWHAAZE00000007	mRNA	63771375	63773307	+
GWHAAZE00000007	exon	63771375	63772002	+
GWHAAZE00000007	exon	63772363	63772439	+
GWHAAZE00000007	exon	63772808	63773307	+
GWHAAZE00000007	CDS	63771375	63772002	+
GWHAAZE00000007	CDS	63772363	63772439	+
GWHAAZE00000007	CDS	63772808	63773290	+
GWHAAZE00000007	three_prime_UTR	63773291	63773307	+

Transcript Sequence
>GWHTAAZE025611 ATGGAGGATTCTAGGCAGCAACTACAAACATACCGGGTGAATAATCAAGGGCCCAGACCAGTTCTTGAAGAATTCATACCGCTAAAAAACTCAAGCTCTGAACCATTAGAGAAGCCGTCAAGCGTGTCCGATAAGGCCACGTGGATGACAACTGCACAATTGTGGAGCCCAGCAAGTGATGGTATGTTAACAAAAAACCAACCAAGCACACAATTATCTTCTAAAGAAAGTGAATTAAATTTCACCACTATTAACAGTCCCAAATTAGGGCTTGATACGAAACAAAGAAATGGCGGGGCCTTTCTTCCATTTTCCAAAGAGAGAAACAACGTGAGTCCTAGCCCTATACGTGCTCTTCCTGAGCTGGCGCTTGCTTCAGTCGATAAAGAAATTGAAGAGAAGATGTGTAATGAAAGTGACAATTGTAGTGGCGGGGGGATGGCCATTGAACAAGGAAAAGGTGGTGGGGGTGGCGGTGGGGGTGGGGCGGATTCTCAGACAACAGGTGCCAGTACTGGCGGTGGTGGTGCCAATACCACCACATCGAATTCTCAGACTCATAGGAAGGCAAGGAGGTGTTGGTCACCGGATTTGCACCGCCGGTTTGTTAATGCTCTCAACATGTTAGTGGCCACCCCAAAACAAATCAGGGAGCTCATGAAGGTTGACGGTTTGACTAATGATGAAGTTAAAAGCCATTTACAGAAATATAGACTCCACACAAGAAGGCCAAGCCCAAGCCCACAAGCTGCAGGTGCACCTGGACCTCAGCTAGTAGTCCTAGGTGGCATATGGGTCCCACCAGAGTACGCCCACCACCACCACGGCGGCCCACCCACCGCCCTCTACAGCACCACTGCTCACCCCTCCCCTCACTACTGTCCCCAGCCAGTCCCCCAGGAATTCTACCCTGCACCACCGCCCCAGCCGCCACCTCACCACCAGTTGCACCGCCACCTCCACCATCAACTCCACCTGTACAACTCTTCCTCCCGGGCCCAAGGCTCACCGGAGTCTGACCTCAGGGGTGGCACTGGCGACAGGTCCGAGAGCATTGAGGACGGAAAGTCTGAAGGAAGTAGTTGGAAGGCTGACAGTGGAGGCGAGAACGGAGGAGAGAGAAAGGGGTTAGTGGTGAGAGAGGATGGTGAAGAGAGCAATGGGAGTGATATTACTCTCAAGTTTTAAAATTTTATTTTATGTGA

Network for GWHGAAZE025577

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.147
	SRR3591706	second leaf	10.667
	SRR3591707	mature leaf	13.365
	SRR3591708	Shoot apex	9.909
	SRR3591709	Stem	28.794
	SRR3591710	White floral bud	11.689
	SRR3591711	White flower	14.158
	SRR3591712	Green floral bud	9.275
	SRR3591713	Yellow flower	2.856
SRP173429	SRR8316895	Juvenile bud stage	2.824
	SRR8316896	Juvenile bud stage	3.005
	SRR8316897	Juvenile bud stage	1.205
	SRR8316894	Third green stage	3.294
	SRR8316900	Third green stage	4.322
	SRR8316901	Third green stage	4.462
	SRR8316898	Complete white stage	1.111
	SRR8316899	Complete white stage	8.965
	SRR8316903	Complete white stage	4.087
	SRR8316902	Silver flowering stage	1.162
	SRR8316904	Silver flowering stage	1.413
	SRR8316905	Silver flowering stage	0.392
	SRR8316906	Gold flowering stage	2.586
	SRR8316907	Gold flowering stage	1.910
	SRR8316908	Gold flowering stage	1.710
SRP132670	SRR6706286	Control	4.483
	SRR6706287	Light intensity 50%	3.628
	SRR6706288	Light intensity 20%	3.914
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.771
	CNS0095593	Slightly white alabastrum(diploid) 2	7.455
	CNS0095594	Slightly white alabastrum(diploid) 3	6.431
	CNS0095595	Whole white alabastrum(diploid) 2	5.287
	CNS0095596	Whole white alabastrum(diploid) 3	3.622
	CNS0095597	Whole white alabastrum(diploid) 4	3.583
	CNS0095598	Silvery flower (diploied) 1	16.045
	CNS0095599	Silvery flower (diploied) 2	17.916
	CNS0095600	Silvery flower (diploied) 3	5.903
	CNS0095601	Golden flower (diploid) 1	6.994
	CNS0095602	Golden flower (diploid) 2	4.334
	CNS0095603	Golden flower (diploid) 3	3.949
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.494
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.349
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.038
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.994
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.803
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.801
	CNS0095610	Silvery flower (tetraploid) 1	4.486
	CNS0095611	Silvery flower (tetraploid) 2	3.112
	CNS0095612	Silvery flower (tetraploid) 3	3.186
	CNS0095613	Golden flower (tetraploid) 1	4.626
	CNS0095614	Golden flower (tetraploid) 2	3.836
	CNS0095615	Golden flower (tetraploid) 3	3.502
CRA001975	CRR073297	Stem 1	3.934
	CRR073298	Stem 2	3.964
	CRR073299	Stem 3	3.367
	CRR073300	Leaf 1	4.266
	CRR073301	Leaf 2	4.145
	CRR073302	Leaf 3	1.845
	CRR073303	Juvenile bud 1	5.376
	CRR073304	Juvenile bud 2	2.175
	CRR073305	Juvenile bud 3	11.230
	CRR073306	Third green 1	3.377
	CRR073307	Third green 2	3.284
	CRR073308	Third green 3	3.536
	CRR073309	Second white 1	2.349
	CRR073310	Second white 2	2.237
	CRR073311	Second white 3	1.834
	CRR073312	Silver flowering 1	1.654
	CRR073313	Silver flowering 2	1.630
	CRR073314	Silver flowering 3	0.863
	CRR073315	Gold flowering 1	8.038
	CRR073316	Gold flowering 2	6.983
	CRR073317	Gold flowering 3	5.849
	CRR073318	Tawny withering 1	22.212
	CRR073319	Tawny withering 2	44.967
	CRR073320	Tawny withering 3	23.916