Gene detail

Detail information of GWHGAAZE025571

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03399.1	0	unnamed protein product [Coffea canephora]
COG	NP_614161.1	4E-123	proteasome-activating nucleotidase
Swissprot	tr\|Q9C5U3\|PRS8A_ARATH	0	26S protease regulatory subunit 8 homolog A
trEMBL	tr\|A0A068U5D8\|A0A068U5D8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313\|EMBL:CDP03399.1}
TAIR10	AT5G19990.1	0	regulatory particle triple-A ATPase 6A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	63631090	63650871	-
GWHAAZE00000007	mRNA	63631090	63650871	-
GWHAAZE00000007	exon	63650446	63650871	-
GWHAAZE00000007	exon	63648000	63648137	-
GWHAAZE00000007	exon	63647849	63647917	-
GWHAAZE00000007	exon	63647697	63647768	-
GWHAAZE00000007	exon	63646984	63647066	-
GWHAAZE00000007	exon	63646742	63646873	-
GWHAAZE00000007	exon	63646203	63646416	-
GWHAAZE00000007	exon	63640327	63640354	-
GWHAAZE00000007	exon	63640008	63640214	-
GWHAAZE00000007	exon	63635492	63635589	-
GWHAAZE00000007	exon	63635069	63635293	-
GWHAAZE00000007	exon	63634875	63634937	-
GWHAAZE00000007	exon	63634284	63634447	-
GWHAAZE00000007	exon	63633027	63633183	-
GWHAAZE00000007	exon	63632823	63632921	-
GWHAAZE00000007	exon	63632104	63632214	-
GWHAAZE00000007	exon	63631090	63631230	-
GWHAAZE00000007	CDS	63650446	63650871	-
GWHAAZE00000007	CDS	63648000	63648137	-
GWHAAZE00000007	CDS	63647849	63647917	-
GWHAAZE00000007	CDS	63647697	63647768	-
GWHAAZE00000007	CDS	63646984	63647066	-
GWHAAZE00000007	CDS	63646742	63646873	-
GWHAAZE00000007	CDS	63646203	63646416	-
GWHAAZE00000007	CDS	63640327	63640354	-
GWHAAZE00000007	CDS	63640008	63640214	-
GWHAAZE00000007	CDS	63635492	63635589	-
GWHAAZE00000007	CDS	63635069	63635293	-
GWHAAZE00000007	CDS	63634875	63634937	-
GWHAAZE00000007	CDS	63634284	63634447	-
GWHAAZE00000007	CDS	63633027	63633183	-
GWHAAZE00000007	CDS	63632823	63632921	-
GWHAAZE00000007	CDS	63632104	63632214	-
GWHAAZE00000007	CDS	63631090	63631230	-

Transcript Sequence
>GWHTAAZE025605 ATGGCCACCTCTTTCCTTTCCGACCACATTTTCCGGCCATTCCCTTACTCCACCCACCGGACACTCGCCTCCTTCAAACCCACCGGAGTTTATCTCTACACATCCCCTTCCAAGAATTCAAGAACAAGAACCTTAGTGTCAAAAACAGATAATAAAAAAAAGAAGTTCAAGTGGGTAGTTAGATTGAGCTTGGCTGAACAAAGTCCACCAAAATCGACTGTTGACGTGAAAAGATTGGTGGACTTTTTGTACGAGGACCTTCCGCATCTGTTTGATGATCAGGGGATTGATCGCACGGCCTACGATGAACGGGTTAAGTTTTGGGACCCAATTACTAAACATGATACCATTCGTGGGTATTTGTTTAACATAGAATTGTTGAAGAAGCTTTTTAGTCCTGATTTCAAGTTGCATTGGGCCAAACAGACAGGACCTTACGAAATAACTACAAGGTGGACTATGGTAATGAGTTTTGCTCTTCTTCCTTGGAAACCAGAGTTGGTCTTCACCGGAACATCGGTTATGGGCATCAACCCTGAAACTCAGAAGTTCTGCAGCCATGTGGACTATTGGGATTCCATAGAGAAAAATGACTATTTTTCTCTAGAAGGCTTATTGGACGTAATAAAGCAGTTACGGATTTACAAGACTCCGGACTTGGAAACACCCAAATATCAGATACTGAGACGGACCTCAAAGTATGAGGTGAGAAAGTATGCCCCCTTCATAGTTGTAGAAACAGATGCCGATAAACTGGCTGCGTCTAGTGGCTTTAACGCAATTGCTGGGTACATATTTGGGAAGAATTCCAAATCAGAAAAGATACCCATGACCACCCCTGTTTTCACTCAGGCATTTGATGCTGACATGTCCAAAGTTTCTATCCAAATAGTTCTTCCATCAGATAAAGAAATGAGCAGTTTACCGGATCCCAATCAAGATGCAATTAGCCTGAGAAAAGTTGAAGGTGGCATTGCTGCAGTAACAAAGTTTAGTGGAAAACCAACCGAGGACATCGTTCGTGAGGAAGAGAAATCACTTCGGTCTAGTCTTATTAGAGACGGTCTCAAACCAAAAACGGGTTGTTTGCTTGCTCGCTATAATGACCCTGGACGAACATGGAGCTTTATGTTGGATTACGATCGGTTTCAACCGTTAAACGGAGATCCAATGGCGGCAGTAGAGATCGAGACGGGCCGTAATGAAATAGCAAAAGAAGAGATCTGTTCGACCAAGACAATGGTCAAGCAGGGTGAGGGACTGAGGCAATACTATGTTCAAAACATACACGATCTTCAGCTCCAGGTTCGCCAAAAAACCCACAATCTCAATCGCCTTGAGGCCCAGCGCAATGATCTCAATTCAACAGTGAGGAGGCTGAAGGAGGAATTACAGCTACTTCAGGAGCCTGGATCTTATGTTGGTGAAGTTGTCAAAGTTATGGGCAAATCTAAGGTTCTAGTTAAAGTTCATCCAGAGGGAAAATATGTGGTTGATATTGATAAAAACATTGATATTACCAAGATCACACCATCAGCTAGAGTTGCCCTCCGCAATGACAGCTATGTTCTTCATTTGGTTTTGCCCAGCAAAGTTGATCCTCTGGTCAATCTCATGAAAGTCGAAAAAGTTCCTGATTCTACGTATGACATGATTGGTGGCCTTGATCAGCAAATTAAAGAGATAAAGGAGGTTATTGAGCTGCCAATCAAGCATCCTGAATTATTTGAGAGTCTTGGTATAGCCCAACCAAAGGGAGTCTTGCTTTATGGACCACCAGGCACAGGAAAAACATTGTTAGCTAGGGCAGTGGCTCATCATACTGATTGTACTTTCATCAGAGTTTCTGGTTCTGAGCTAGTACAAAAATATATCGGAGAAGGCTCTCGAATGGTGAGGGAACTTTTTGTTATGGCCAGGGAACATGCTCCATCAATCATATTTATGGATGAAATTGATAGTATTGGATCAGCCCGAATGGAATCTGGAAGTGGCAATGGCGACAGTGAAGTGCAGCGGACTATGCTTGAGCTTCTCAACCAGTTGGACGGGTTTGAAGCATCCAACAAGATCAAGGTTTTGATGGCAACAAACCGTATTGATATTCTGGATCAAGCCCTTCTCAGACCTGGTCGGATTGACAGGAAGATCAAATTTCCAAATCCCAATGAAGAGTCTCGGTGGGATATCTTGAAAATTCATTCAAGAAGAATGAACTTGATGCGTGGCATTGATTTGAAAAAGATTGCCAAGAAGATGCATGGTGCTTCGGGTGCAGAGCTCAAGGCGGTGTGCACAGAAGCAGGTATGTTTGCATTGAGGGAGAGGAGGGTCCATGTAACGCAGGAAGATTTCGAGATGGCGGTGGCTAAGGTCATGAAGAAGGAGACCGAGAAGAACATGTCGTTAAGGAAACTCTGGAAGTAA

Network for GWHGAAZE025571

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10184.10	DUF2358	78	187	3.30E-25
PF04832.13	SOUL	220	371	2.20E-39
PF16450.6	Prot_ATP_ID_OB	474	529	6.00E-08
PF00004.30	AAA	587	720	1.60E-42
PF17862.2	AAA_lid_3	744	786	1.70E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03066	PSMC5, RPT6	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0030163	biological_process	protein catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.137
	SRR3591706	second leaf	48.112
	SRR3591707	mature leaf	51.306
	SRR3591708	Shoot apex	53.255
	SRR3591709	Stem	27.542
	SRR3591710	White floral bud	35.031
	SRR3591711	White flower	46.308
	SRR3591712	Green floral bud	44.896
	SRR3591713	Yellow flower	41.029
SRP173429	SRR8316895	Juvenile bud stage	34.633
	SRR8316896	Juvenile bud stage	52.392
	SRR8316897	Juvenile bud stage	22.021
	SRR8316894	Third green stage	20.437
	SRR8316900	Third green stage	63.910
	SRR8316901	Third green stage	61.267
	SRR8316898	Complete white stage	24.304
	SRR8316899	Complete white stage	60.542
	SRR8316903	Complete white stage	33.730
	SRR8316902	Silver flowering stage	32.965
	SRR8316904	Silver flowering stage	39.072
	SRR8316905	Silver flowering stage	23.426
	SRR8316906	Gold flowering stage	72.108
	SRR8316907	Gold flowering stage	65.021
	SRR8316908	Gold flowering stage	65.443
SRP132670	SRR6706286	Control	46.210
	SRR6706287	Light intensity 50%	46.057
	SRR6706288	Light intensity 20%	49.364
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.865
	CNS0095593	Slightly white alabastrum(diploid) 2	42.766
	CNS0095594	Slightly white alabastrum(diploid) 3	43.673
	CNS0095595	Whole white alabastrum(diploid) 2	42.788
	CNS0095596	Whole white alabastrum(diploid) 3	44.873
	CNS0095597	Whole white alabastrum(diploid) 4	38.612
	CNS0095598	Silvery flower (diploied) 1	30.001
	CNS0095599	Silvery flower (diploied) 2	33.271
	CNS0095600	Silvery flower (diploied) 3	59.341
	CNS0095601	Golden flower (diploid) 1	34.037
	CNS0095602	Golden flower (diploid) 2	51.704
	CNS0095603	Golden flower (diploid) 3	53.325
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.077
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.525
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.071
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.684
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.107
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.854
	CNS0095610	Silvery flower (tetraploid) 1	59.591
	CNS0095611	Silvery flower (tetraploid) 2	64.544
	CNS0095612	Silvery flower (tetraploid) 3	62.848
	CNS0095613	Golden flower (tetraploid) 1	44.620
	CNS0095614	Golden flower (tetraploid) 2	52.656
	CNS0095615	Golden flower (tetraploid) 3	51.308
CRA001975	CRR073297	Stem 1	37.183
	CRR073298	Stem 2	41.357
	CRR073299	Stem 3	44.094
	CRR073300	Leaf 1	40.369
	CRR073301	Leaf 2	39.954
	CRR073302	Leaf 3	43.995
	CRR073303	Juvenile bud 1	42.377
	CRR073304	Juvenile bud 2	34.004
	CRR073305	Juvenile bud 3	40.349
	CRR073306	Third green 1	24.582
	CRR073307	Third green 2	22.497
	CRR073308	Third green 3	21.954
	CRR073309	Second white 1	36.229
	CRR073310	Second white 2	38.793
	CRR073311	Second white 3	32.818
	CRR073312	Silver flowering 1	29.560
	CRR073313	Silver flowering 2	26.553
	CRR073314	Silver flowering 3	22.733
	CRR073315	Gold flowering 1	57.234
	CRR073316	Gold flowering 2	74.270
	CRR073317	Gold flowering 3	58.092
	CRR073318	Tawny withering 1	32.309
	CRR073319	Tawny withering 2	29.804
	CRR073320	Tawny withering 3	33.112