Gene detail

Detail information of GWHGAAZE025538

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285192.1	2.1382E-156	PREDICTED: heme oxygenase 1, chloroplastic [Vitis vinifera]
Swissprot	tr\|O48782\|HMOX1_ARATH	2E-140	Heme oxygenase 1, chloroplastic (Precursor)
trEMBL	tr\|G9BRR3\|G9BRR3_TOBAC	2E-152	Heme oxygenase 1 {ECO:0000313\|EMBL:AEI69673.1}
TAIR10	AT2G26670.1	7E-107	Plant haem oxygenase (decyclizing) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	62858318	62867276	+
GWHAAZE00000007	mRNA	62858318	62867276	+
GWHAAZE00000007	exon	62858318	62858753	+
GWHAAZE00000007	exon	62863529	62863752	+
GWHAAZE00000007	exon	62866625	62866732	+
GWHAAZE00000007	exon	62867184	62867276	+
GWHAAZE00000007	CDS	62858318	62858753	+
GWHAAZE00000007	CDS	62863529	62863752	+
GWHAAZE00000007	CDS	62866625	62866732	+
GWHAAZE00000007	CDS	62867184	62867276	+

Transcript Sequence
>GWHTAAZE025572 ATGGCTAGCGTAGCCCCTATTTCACAATCCCAACTCCTCCTCAACGCCCCTCAATTAAAATCCCCCAAAAATCTCCATCCCAATTTCTCATCGGTTAAGATTACAAACCCTACCCCTAATTCCACCGGAATGTTCCCTAGTTTTTCTGCGCCGAGGAAGAAGATGGTGGTTGTGGTGGCAGCTACAACCGCCGCGGAGGCTGAGAAGTCCAAGAAGAGGTATCCCGGGGAGGCCAAGGGTTTTGTGGAGGAGATGAGATTTGTGGCGATGAAATTGCACACTAGGGATCAAGCTAAGGAAGGAGAGAAGGAGCCTCAAGGTCAACCGGTGGCTAAATGGGAGCCCAAGGTTGAAGGTTACTTAAGTTTTTTGGTCGATAGTAAGTTGGTTTATGATACACTTGAGGGGATTGTTGCCAGGGCTGATTTCCCTGAATATTCTGAGTTCAGGAACACGGGATTGGAAAGGTCAGAAAGTCTGGCAAAAGATTTGGAATGGTTCAAAGAGCAAGGTCATGTCATTCCTGAACCGTCTGCTCCAGGTGTTAGCTATGCGCTTTATCTTGAAGAATTGTCAAAGAAGGATCCTCAAGCATTTATTTGCCATTTCTACAATATCTACTTTGCCCACACAGCTGGTGGTCGAATGATAGGGAAAAAGGTAGCTGAAAAGATACTTAACAGGAAGGAGTTGGAATTTTACAAATGGGACGGTGACCTGTCACAACTGTTGCAGAATGTTAGAGAGAAATTGAACACAGTTGCTGAAAGCTGGACAAGGGAGGAGAAGAACCATTGTTTGGAAGAAACCGAGAAATCGTTCAAATTTTCTGGGGATATTCTACGTCTCATATTGTCATAG

Network for GWHGAAZE025538

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01126.21	Heme_oxygenase	114	281	1.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K21480	HO, pbsA1, hmuO	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0006788	biological_process	heme oxidation
GO:0055114	biological_process	oxidation-reduction process
GO:0004392	molecular_function	heme oxygenase (decyclizing) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	93.901
	SRR3591706	second leaf	111.326
	SRR3591707	mature leaf	119.239
	SRR3591708	Shoot apex	74.989
	SRR3591709	Stem	169.839
	SRR3591710	White floral bud	123.184
	SRR3591711	White flower	211.160
	SRR3591712	Green floral bud	111.282
	SRR3591713	Yellow flower	287.791
SRP173429	SRR8316895	Juvenile bud stage	86.608
	SRR8316896	Juvenile bud stage	231.349
	SRR8316897	Juvenile bud stage	69.842
	SRR8316894	Third green stage	85.273
	SRR8316900	Third green stage	113.615
	SRR8316901	Third green stage	139.958
	SRR8316898	Complete white stage	49.139
	SRR8316899	Complete white stage	124.421
	SRR8316903	Complete white stage	79.683
	SRR8316902	Silver flowering stage	48.009
	SRR8316904	Silver flowering stage	64.409
	SRR8316905	Silver flowering stage	37.432
	SRR8316906	Gold flowering stage	127.550
	SRR8316907	Gold flowering stage	141.802
	SRR8316908	Gold flowering stage	141.045
SRP132670	SRR6706286	Control	126.860
	SRR6706287	Light intensity 50%	127.628
	SRR6706288	Light intensity 20%	113.446
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	87.164
	CNS0095593	Slightly white alabastrum(diploid) 2	65.590
	CNS0095594	Slightly white alabastrum(diploid) 3	110.983
	CNS0095595	Whole white alabastrum(diploid) 2	61.820
	CNS0095596	Whole white alabastrum(diploid) 3	57.462
	CNS0095597	Whole white alabastrum(diploid) 4	61.304
	CNS0095598	Silvery flower (diploied) 1	92.760
	CNS0095599	Silvery flower (diploied) 2	111.479
	CNS0095600	Silvery flower (diploied) 3	149.929
	CNS0095601	Golden flower (diploid) 1	108.177
	CNS0095602	Golden flower (diploid) 2	197.068
	CNS0095603	Golden flower (diploid) 3	205.097
	CNS0095604	Slightly white alabastrum(tetraploid) 1	64.306
	CNS0095605	Slightly white alabastrum(tetraploid) 2	62.239
	CNS0095606	Slightly white alabastrum(tetraploid) 3	91.770
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.909
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.763
	CNS0095609	Whole white alabastrum(tetraploid) 3	94.062
	CNS0095610	Silvery flower (tetraploid) 1	158.968
	CNS0095611	Silvery flower (tetraploid) 2	147.873
	CNS0095612	Silvery flower (tetraploid) 3	120.698
	CNS0095613	Golden flower (tetraploid) 1	165.913
	CNS0095614	Golden flower (tetraploid) 2	167.191
	CNS0095615	Golden flower (tetraploid) 3	170.600
CRA001975	CRR073297	Stem 1	100.239
	CRR073298	Stem 2	137.475
	CRR073299	Stem 3	97.985
	CRR073300	Leaf 1	87.905
	CRR073301	Leaf 2	76.567
	CRR073302	Leaf 3	68.000
	CRR073303	Juvenile bud 1	77.021
	CRR073304	Juvenile bud 2	80.258
	CRR073305	Juvenile bud 3	72.600
	CRR073306	Third green 1	45.067
	CRR073307	Third green 2	32.221
	CRR073308	Third green 3	34.055
	CRR073309	Second white 1	69.637
	CRR073310	Second white 2	61.240
	CRR073311	Second white 3	60.238
	CRR073312	Silver flowering 1	66.952
	CRR073313	Silver flowering 2	54.667
	CRR073314	Silver flowering 3	65.613
	CRR073315	Gold flowering 1	92.779
	CRR073316	Gold flowering 2	121.313
	CRR073317	Gold flowering 3	69.653
	CRR073318	Tawny withering 1	46.853
	CRR073319	Tawny withering 2	47.084
	CRR073320	Tawny withering 3	57.037