Gene detail

Detail information of GWHGAAZE025533

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009760786.1	0	PREDICTED: phospholipase D alpha 1-like [Nicotiana sylvestris]
COG	YP_003981721.1	5E-33	phospholipase D
Swissprot	tr\|Q41142\|PLDA1_RICCO	0	Phospholipase D alpha 1 (Precursor)
trEMBL	tr\|M1AKN6\|M1AKN6_SOLTU	0	Phospholipase D {ECO:0000256\|PIRNR:PIRNR036470}
TAIR10	AT3G15730.1	0	phospholipase D alpha 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	62684247	62687334	-
GWHAAZE00000007	mRNA	62684247	62687334	-
GWHAAZE00000007	exon	62687311	62687334	-
GWHAAZE00000007	exon	62685248	62687144	-
GWHAAZE00000007	exon	62684247	62684855	-
GWHAAZE00000007	CDS	62687311	62687334	-
GWHAAZE00000007	CDS	62685248	62687144	-
GWHAAZE00000007	CDS	62684422	62684855	-
GWHAAZE00000007	three_prime_UTR	62684247	62684421	-

Transcript Sequence
>GWHTAAZE025567 ATGCCATCTTTGCACTATGCCATGCTTGTGGATGACATAGAGCATGTCGTGGGCTTCAATAAGACTGCTTCATGCCTTTATGCAACGATCGATTTGGAAAAAGCAAGAGTTGGCCGAACCAGGCTTTTAGAAGAACACTCCAATCCCCGTTGGTACGAGTCGTTTCACATTTATTGCGCTCATATGGCTTCTGATGTTATATTTACCATCAAAGAAGATAACCCAGTTGGCGCAGAACTAATTGGACGAGCATACATCCCCGTTCGAGAACTCTTAGGTGGTGAAGAAATTGATAAATGGGTTGAAATCATGGATAAAAACCGAAAACCCATTAAGGGAAATTCCAAGATCCATGTGAAACTTCAATATTTCGATGTCTCAATGGAACGGAATTGGGCTCGAGGAATCAAAAATCCAAAGTTTCCTGGTGTGCCTTACACTTTTTTCTCTCAAAGAAAAGGATGCAAAGTTTCTCTTTACCAAGATTCTCACATACCAAACGACTTTATACCCAAAATCCCTCTCTCAGGGGGAAAGTTTTACGAGCCGCATCGGTGTTGGGAAGACATATTTGAAGCCATTTCTAATGCGCAGCACTTCATTTACATAGCAGGTTGGTCCGTGTACACTGAAATCACGTTGATAAGGGACTCGAAGAGGCCAAAGCCCGGCGGGGACATGACCTTAGGGGAGTTACTCAAGAAAAAGGCTAACGAAGGTGTGAGGGTACTAATGCTTGTTTGGGATGATAGAACATCGGTTAAGTTACTAAAACAGGACGGATTAATGGCAACCCATGATGAAGAAACTGGAAATTACTTTCAAAACACCGAAGTCCATTGTGTGTTATGTCCGCGAAATCCAGATGATGGGCGAAGCATCATTCAAAATTTAGAGATTTCTACTATGTTCACTCATCACCAAAAGATTGTTGTAGTGGATAGTGCGATGCCCAATGGGGATACACAAAGGAGGAGGATCGTGAGTTTTATTGGCGGTATTGATCTTTGTGATGGTCGATATGATACTCCTTTTCACACCCTTTTTAGGACTTTGGACACGGCCCACCATAACGACTTTCACCAGCCGAATTTTGCCGGTGCTACCATCGAAAAAGGCGGTCCGAGGGAGCCTTGGCACGATATTCATAGCCGGTTAGAGGGGCCAATTGCTTGGGATGTGCTCTTCAACTTTGAGCAAAGGTGGTTAAAGCAAGGCACTAAGGGCTTGCTAGTTAAACTTAGAGAACTTGAACACATACTCATACCACCATCACCAGTCGTGCACCCCGATGACCACGAAACGTGGAATGTGCAACTATTCCGGTCCATAGACGGTGGAGCTGCCTTCGGGTTCCCAGATAAACCCGAGGATGCAGCTAAGGTCGGCCTCGTTAGTGGGAAAGACAATGTGATTGACCGGAGTATACAAGATGCGTATATAAATGCCATTCGTCGCGCCAAGAACTTTATATACATTGAAAATCAATACTTTCTCGGGAGTTCTTTTGCTTGGAACTCGACTGATATCAAGGACGAGGATATTGGCGCTTTGCACTTGGTTCCAAAAGAACTTTCACTAAAGATTGTTAGTAAGATTGAAGCCAGGGAGAGGTTTACGGTGTATGTTGTTATGCCAATGTGGCCAGAGGGGATGCCCGAGAGTGGATCTGTACAAGCAATATTGAATTGGCAAAAGAGGACTATGGAGATGATGTATACTGATATAGTTCAAGCACTTAAGGCCAAGGGGATTGTGGCTAATCCAAAGGAGTATTTGAGCTTCTTTTGCTTGGGAAACAGAGAGAAGAAGGTTAGCGGCGAGTATATGCCTCCACAGAAGCCTGAAAATGATAGTGATTATAGTAGAGCTCAGCAAGCTAGGAGGTTCATGATTTATGTCCATGCTAAGATGATGATAGTTGATGACGAATACATAATCATCGGATCGGCCAACATCAATCAAAGGTCAATGGATGGGGCGAGGGACTCGGAAATCGCAATGGGAGGGTACCAACCCTTCCACCTATCAACCATCCAACCAGCAAGGGGCCAAATCCACGGCTTTAGGATGGCATTGTGGTACGAGCATCTAGGCTTGCTCGACAACTCCTTTCTTCAACCCGAGAGCGTACAATGCATCCGAAAGGTGAACCAGTTGGCCGAAAATTATTGGGACCTTTACGCAAAGGACACAGTCGACCGTGACTTGCCAGGCCACTTGCTCAGTTACCCAATTGCAGTCGCTGCAAGCGGAGAGGTTACTGAGCTGCCTGGGACTCATAATTTCCCAGATACTAAGGCTCCGGTTCTTGGTACTAGGGAGGATTTTCTTCCTCCAATTCTCACTACTTGAGAGTATTTTATTGCATTTTCATCATGTTCTCGGTAGCAATAATTATCCCTTCTGTTTATGTATGTGTGCAAGTGTTCGCTGGTGATCAGTAGTGCATGTTGTTTGTTGGCGGGGAGTTGATAAACATGGTGCGCATTCTGAAATTTCTAATAAACAATTTTCCTTTAAGTTGGTT

Network for GWHGAAZE025533

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.31	C2	22	103	4.20E-12
PF00614.23	PLDc	302	340	3.20E-10
PF00614.23	PLDc	631	657	1.30E-07
PF12357.9	PLD_C	702	773	1.50E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0046470	biological_process	phosphatidylcholine metabolic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0004630	molecular_function	phospholipase D activity
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	121.305
	SRR3591706	second leaf	49.785
	SRR3591707	mature leaf	57.773
	SRR3591708	Shoot apex	81.207
	SRR3591709	Stem	83.395
	SRR3591710	White floral bud	106.926
	SRR3591711	White flower	96.917
	SRR3591712	Green floral bud	63.336
	SRR3591713	Yellow flower	66.261
SRP173429	SRR8316895	Juvenile bud stage	36.062
	SRR8316896	Juvenile bud stage	39.090
	SRR8316897	Juvenile bud stage	21.164
	SRR8316894	Third green stage	22.157
	SRR8316900	Third green stage	86.118
	SRR8316901	Third green stage	127.095
	SRR8316898	Complete white stage	141.137
	SRR8316899	Complete white stage	186.527
	SRR8316903	Complete white stage	187.715
	SRR8316902	Silver flowering stage	62.307
	SRR8316904	Silver flowering stage	101.927
	SRR8316905	Silver flowering stage	48.288
	SRR8316906	Gold flowering stage	78.814
	SRR8316907	Gold flowering stage	77.788
	SRR8316908	Gold flowering stage	79.830
SRP132670	SRR6706286	Control	97.351
	SRR6706287	Light intensity 50%	98.985
	SRR6706288	Light intensity 20%	80.046
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.848
	CNS0095593	Slightly white alabastrum(diploid) 2	40.305
	CNS0095594	Slightly white alabastrum(diploid) 3	35.808
	CNS0095595	Whole white alabastrum(diploid) 2	37.292
	CNS0095596	Whole white alabastrum(diploid) 3	28.061
	CNS0095597	Whole white alabastrum(diploid) 4	38.826
	CNS0095598	Silvery flower (diploied) 1	135.186
	CNS0095599	Silvery flower (diploied) 2	120.434
	CNS0095600	Silvery flower (diploied) 3	150.353
	CNS0095601	Golden flower (diploid) 1	71.465
	CNS0095602	Golden flower (diploid) 2	115.340
	CNS0095603	Golden flower (diploid) 3	111.907
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.349
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.134
	CNS0095606	Slightly white alabastrum(tetraploid) 3	85.070
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.937
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.547
	CNS0095609	Whole white alabastrum(tetraploid) 3	55.456
	CNS0095610	Silvery flower (tetraploid) 1	142.338
	CNS0095611	Silvery flower (tetraploid) 2	149.018
	CNS0095612	Silvery flower (tetraploid) 3	128.595
	CNS0095613	Golden flower (tetraploid) 1	68.559
	CNS0095614	Golden flower (tetraploid) 2	105.543
	CNS0095615	Golden flower (tetraploid) 3	22.448
CRA001975	CRR073297	Stem 1	71.720
	CRR073298	Stem 2	70.338
	CRR073299	Stem 3	78.050
	CRR073300	Leaf 1	90.027
	CRR073301	Leaf 2	78.141
	CRR073302	Leaf 3	68.485
	CRR073303	Juvenile bud 1	96.048
	CRR073304	Juvenile bud 2	331.398
	CRR073305	Juvenile bud 3	111.688
	CRR073306	Third green 1	89.138
	CRR073307	Third green 2	69.135
	CRR073308	Third green 3	64.946
	CRR073309	Second white 1	118.585
	CRR073310	Second white 2	47.288
	CRR073311	Second white 3	28.781
	CRR073312	Silver flowering 1	25.248
	CRR073313	Silver flowering 2	51.307
	CRR073314	Silver flowering 3	35.450
	CRR073315	Gold flowering 1	37.722
	CRR073316	Gold flowering 2	42.664
	CRR073317	Gold flowering 3	39.132
	CRR073318	Tawny withering 1	51.469
	CRR073319	Tawny withering 2	51.073
	CRR073320	Tawny withering 3	50.017