Gene detail

Detail information of GWHGAAZE025517

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009406395.1	PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Musa acuminata subsp. malaccensis]
COG	YP_007142027.1	chaperone protein dnaK
Swissprot	tr\|Q02028\|HSP7S_PEA	Stromal 70 kDa heat shock-related protein, chloroplastic (Precursor)
trEMBL	tr\|I1MJU7\|I1MJU7_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G00410.1}
TAIR10	AT4G24280.1	chloroplast heat shock protein 70-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	62385196	62392761	+
GWHAAZE00000007	mRNA	62385196	62392761	+
GWHAAZE00000007	exon	62385196	62385344	+
GWHAAZE00000007	exon	62386710	62387085	+
GWHAAZE00000007	exon	62388547	62388799	+
GWHAAZE00000007	exon	62389661	62389740	+
GWHAAZE00000007	exon	62389836	62389978	+
GWHAAZE00000007	exon	62390060	62390158	+
GWHAAZE00000007	exon	62390572	62390761	+
GWHAAZE00000007	exon	62391324	62391722	+
GWHAAZE00000007	exon	62392357	62392761	+
GWHAAZE00000007	CDS	62385196	62385344	+
GWHAAZE00000007	CDS	62386710	62387085	+
GWHAAZE00000007	CDS	62388547	62388799	+
GWHAAZE00000007	CDS	62389661	62389740	+
GWHAAZE00000007	CDS	62389836	62389978	+
GWHAAZE00000007	CDS	62390060	62390158	+
GWHAAZE00000007	CDS	62390572	62390761	+
GWHAAZE00000007	CDS	62391324	62391722	+
GWHAAZE00000007	CDS	62392357	62392761	+

Transcript Sequence
>GWHTAAZE025551 ATGGCCGTTTCTTCAACCCAAGTTCGTGTCCACTCAACTTTCCCTACATTTTCTCACAAACCAAACACCAACTTCTCCTCAAAAACTCCATTCCTCGGATTCCTTAAAAACGGGAACAACAAGAAGGGAGGATGCAGCTACAGGTACAGGTACAGGCCATTGAGGGTTGTGAGCGAGAAGGTAGTGGGGATAGATTTGGGGACAACAAATTCGGCCGTGGCGGCAATGGAGGGAGGACAGCCGACGATCATAACAAATGCGGAGGGGCAGAGGACTACGCCGTCGGTGGTGGCGTACACGAAAAACGGGGATAGGTTAGTAGGCCAGATAGCGAAGAGACAGGCAGTGGTAAATCCAGAGAACACATTCTTTTCCGTGAAGAGATTCGTGGGGAGGAAGATGCAGGAGGTGGATGAGGAATCAAAGCAGGTGTCGTATAAGGTAGTGAGAGATGAGAATGGTAATGTCAAGCTTGAGTGCCCTGCTATTGGCAAACAATTTGCACCCGAGGAGATATCTGCCCAGGTGTTAAGAAAGCTCGTGGACGATGCATCAAAGTTCTTAAACGACAAGGTTTCTAAAGCAGTGGTGACAGTGCCAGCATATTTCAATGATTCTCAAAGGACCGCAACAAAAGATGCTGGTCGGATTGCAGGTTTAGAAGTTTTGCGCATCATCAATGAGCCTACTGCTGCTTCGTTGGCGTACGGTTTCGAAAAGAAGAATAACGAAACCATTCTTGTATTTGACCTCGGAGGTGGTACTTTTGATGTATCAGTTCTTGAGGTGGGTGACGGAGTCTTTGAGGTGCTTTCTACATCAGGTGATACACATCTAGGGGGTGATGACTTCGACAAGAGAATTGTTGATTGGCTTGCTGAAAATTTCAAGAGAGACGAAGGCATAGATCTGCTGAAAGACAAACAAGCACTTCAACGTCTCACTGAGACCGCGGAGAAAGCGAAGATGGAGTTGTCCTCTTTAACCCAAACTAACATTAGTTTACCTTTCATTACTGCCACTGCAGAAGGACCGAAGCACATTGAGACCACACTAACAAGGGCCAAGTTTGAAGATTTATGTTCAGATTTACTGGACAGGCTTCGAACTCCTGTGGACAATGCTTTAAAGGATGCAAAGCTGGCCTTGAAAGATGTAGATGAGGTGATCCTTGTAGGTGGGTCAACCCGTATCCCTGCTGTTCAAGAGCTTGTGAAAAAGATGACTGGGAAAGAACCCAATGTCACTGTTAACCCCGATGAAGTAGTTGCTCTTGGAGCTGCAGTTCAGGCGGGCGTGTTGTCGGGAGATGTGAGTGACATAGTTCTGTTGGATGTGACGCCACTTTCTCTGGGTCTAGAGACTTTGGGTGGGGTAATGACGAAGATCATCCCAAGGAACACAACCTTACCTACCTCGAAATCTGAAGTGTTTTCAACGGCCGCTGATGGGCAGACTAGTGTTGAGATCAATGTTCTGCAAGGCGAAAGAGAGTTTGTGAGAGACAATAAATCTCTAGGAAGCTTTAGGCTTGATGGTATCCCATCGGCCCCACGTGGTGTACCCCAGATAGAAGTGAAATTTGATATTGATGCCAACGGTATTCTCTCTGTTTCGGCTGTTGACAAGGGAACTGGAAAGAAGCAGGACATTACTATCACTGGTGCAAGTACCCTGCCTACAGATGAGGTGGAGAGAATGGTAAAGGAAGCAGAGAAGTTTGCAAAGGAGGACAAAGAGAAGAGGGATGCAATCGACACGAAGAACCAAGCCGAGTCGGTAGTGTACCAAACCGAAAAGCAGCTCAAGGAATTAGGAGACAAAATACCAGCCGCAGTGAAGGAGAAGGTGGAGGCTAAGCTGAAAGAACTTAAAGATGCTGTCTCTGCCACAAGCAGCTCCACCCAAACCATTAAAGACGCAATGGCCGCATTGAACCAAGAAGTAATGCAGATGGGTCAGTCTATTTATAGCCAGCCTGGCACTGCTGGACCCACTCCTCCAGGTGGTGATGCTGCTTCCTCGACTGGTCCCACTAGTAAACCAGCGGATGGAGACGGAGATGTTATTGATGCTGACTTTACTGAAAGCTAG

Network for GWHGAAZE025517

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00012.21	HSP70	61	657	5.40E-264

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03283	HSPA1s	Spliceosome	map03040
		Protein processing in endoplasmic reticulum	map04141
		MAPK signaling pathway	map04010
		Endocytosis	map04144
		Antigen processing and presentation	map04612
		Estrogen signaling pathway	map04915
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0005524	molecular_function	ATP binding
GO:0051082	molecular_function	unfolded protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.534
	SRR3591706	second leaf	8.378
	SRR3591707	mature leaf	25.977
	SRR3591708	Shoot apex	12.210
	SRR3591709	Stem	17.573
	SRR3591710	White floral bud	33.538
	SRR3591711	White flower	81.811
	SRR3591712	Green floral bud	46.460
	SRR3591713	Yellow flower	111.076
SRP173429	SRR8316895	Juvenile bud stage	72.089
	SRR8316896	Juvenile bud stage	248.151
	SRR8316897	Juvenile bud stage	66.613
	SRR8316894	Third green stage	27.325
	SRR8316900	Third green stage	101.329
	SRR8316901	Third green stage	87.122
	SRR8316898	Complete white stage	25.187
	SRR8316899	Complete white stage	98.038
	SRR8316903	Complete white stage	45.448
	SRR8316902	Silver flowering stage	55.954
	SRR8316904	Silver flowering stage	63.050
	SRR8316905	Silver flowering stage	38.890
	SRR8316906	Gold flowering stage	183.750
	SRR8316907	Gold flowering stage	177.111
	SRR8316908	Gold flowering stage	146.052
SRP132670	SRR6706286	Control	129.781
	SRR6706287	Light intensity 50%	119.150
	SRR6706288	Light intensity 20%	121.979
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	50.856
	CNS0095593	Slightly white alabastrum(diploid) 2	39.582
	CNS0095594	Slightly white alabastrum(diploid) 3	42.613
	CNS0095595	Whole white alabastrum(diploid) 2	44.922
	CNS0095596	Whole white alabastrum(diploid) 3	46.898
	CNS0095597	Whole white alabastrum(diploid) 4	47.378
	CNS0095598	Silvery flower (diploied) 1	83.561
	CNS0095599	Silvery flower (diploied) 2	360.161
	CNS0095600	Silvery flower (diploied) 3	358.314
	CNS0095601	Golden flower (diploid) 1	581.229
	CNS0095602	Golden flower (diploid) 2	427.203
	CNS0095603	Golden flower (diploid) 3	433.393
	CNS0095604	Slightly white alabastrum(tetraploid) 1	66.321
	CNS0095605	Slightly white alabastrum(tetraploid) 2	54.721
	CNS0095606	Slightly white alabastrum(tetraploid) 3	133.789
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.204
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.559
	CNS0095609	Whole white alabastrum(tetraploid) 3	174.265
	CNS0095610	Silvery flower (tetraploid) 1	375.274
	CNS0095611	Silvery flower (tetraploid) 2	622.083
	CNS0095612	Silvery flower (tetraploid) 3	480.066
	CNS0095613	Golden flower (tetraploid) 1	353.498
	CNS0095614	Golden flower (tetraploid) 2	440.222
	CNS0095615	Golden flower (tetraploid) 3	397.981
CRA001975	CRR073297	Stem 1	54.887
	CRR073298	Stem 2	58.724
	CRR073299	Stem 3	54.509
	CRR073300	Leaf 1	88.021
	CRR073301	Leaf 2	76.236
	CRR073302	Leaf 3	77.209
	CRR073303	Juvenile bud 1	98.282
	CRR073304	Juvenile bud 2	79.887
	CRR073305	Juvenile bud 3	114.394
	CRR073306	Third green 1	105.536
	CRR073307	Third green 2	53.331
	CRR073308	Third green 3	70.051
	CRR073309	Second white 1	179.252
	CRR073310	Second white 2	160.793
	CRR073311	Second white 3	198.507
	CRR073312	Silver flowering 1	181.947
	CRR073313	Silver flowering 2	191.631
	CRR073314	Silver flowering 3	139.905
	CRR073315	Gold flowering 1	60.467
	CRR073316	Gold flowering 2	96.389
	CRR073317	Gold flowering 3	85.336
	CRR073318	Tawny withering 1	26.225
	CRR073319	Tawny withering 2	18.017
	CRR073320	Tawny withering 3	20.860