Detail information of GWHGAAZE025509


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002263967.10PREDICTED: DNA ligase 4 isoform X1 [Vitis vinifera]
COGNP_615688.11E-34DNA ligase (ATP)
Swissprottr|Q9LL84|DNLI4_ARATH0DNA ligase 4
trEMBLtr|D7SQI2|D7SQI2_VITVI0DNA ligase {ECO:0000256|RuleBase:RU000617}
TAIR10AT5G57160.10DNA ligase IV

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6217203162211246-
GWHAAZE00000007mRNA6217203162211246-
GWHAAZE00000007exon6217203162172273-
GWHAAZE00000007exon6217253962172644-
GWHAAZE00000007exon6217273662172835-
GWHAAZE00000007exon6217392662174129-
GWHAAZE00000007exon6217432362174410-
GWHAAZE00000007exon6217482662174874-
GWHAAZE00000007exon6217496662175075-
GWHAAZE00000007exon6217582062175921-
GWHAAZE00000007exon6217666462176757-
GWHAAZE00000007exon6218398362184041-
GWHAAZE00000007exon6218413662184170-
GWHAAZE00000007exon6218427262184396-
GWHAAZE00000007exon6219071062190772-
GWHAAZE00000007exon6219208862192163-
GWHAAZE00000007exon6219369062193845-
GWHAAZE00000007exon6219427062194276-
GWHAAZE00000007exon6219436662194403-
GWHAAZE00000007exon6219450262194581-
GWHAAZE00000007exon6219989462199965-
GWHAAZE00000007exon6220710462207195-
GWHAAZE00000007exon6220755662207630-
GWHAAZE00000007exon6220833962208475-
GWHAAZE00000007exon6220856162208646-
GWHAAZE00000007exon6220936362209454-
GWHAAZE00000007exon6221090462211246-
GWHAAZE00000007five_prime_UTR6221123762211246-
GWHAAZE00000007CDS6221090462211236-
GWHAAZE00000007CDS6220936362209454-
GWHAAZE00000007CDS6220856162208646-
GWHAAZE00000007CDS6220833962208475-
GWHAAZE00000007CDS6220755662207630-
GWHAAZE00000007CDS6220710462207195-
GWHAAZE00000007CDS6219989462199965-
GWHAAZE00000007CDS6219450262194581-
GWHAAZE00000007CDS6219436662194403-
GWHAAZE00000007CDS6219427062194276-
GWHAAZE00000007CDS6219369062193845-
GWHAAZE00000007CDS6219208862192163-
GWHAAZE00000007CDS6219071062190772-
GWHAAZE00000007CDS6218427262184396-
GWHAAZE00000007CDS6218413662184170-
GWHAAZE00000007CDS6218398362184041-
GWHAAZE00000007CDS6217666462176757-
GWHAAZE00000007CDS6217582062175921-
GWHAAZE00000007CDS6217496662175075-
GWHAAZE00000007CDS6217482662174874-
GWHAAZE00000007CDS6217432362174410-
GWHAAZE00000007CDS6217392662174129-
GWHAAZE00000007CDS6217273662172835-
GWHAAZE00000007CDS6217253962172644-
GWHAAZE00000007CDS6217203162172273-
Transcript Sequence

Network for GWHGAAZE025509

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04675.15DNA_ligase_A_N61863.00E-38
PF01068.22DNA_ligase_A_M2263772.30E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10777LIG4, DNL4 Non-homologous end-joining map03450

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0051103biological_processDNA ligation involved in DNA repair
GO:0071897biological_processDNA biosynthetic process
GO:0003677molecular_functionDNA binding
GO:0003910molecular_functionDNA ligase (ATP) activity
GO:0003909molecular_functionDNA ligase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.724
SRR3591706second leaf4.929
SRR3591707mature leaf5.942
SRR3591708Shoot apex6.792
SRR3591709Stem6.032
SRR3591710White floral bud6.804
SRR3591711White flower7.139
SRR3591712Green floral bud5.066
SRR3591713Yellow flower5.966
SRP173429 SRR8316895Juvenile bud stage 5.588
SRR8316896Juvenile bud stage 6.929
SRR8316897Juvenile bud stage 3.838
SRR8316894Third green stage 3.158
SRR8316900Third green stage 6.099
SRR8316901Third green stage 5.315
SRR8316898Complete white stage 1.951
SRR8316899Complete white stage 10.028
SRR8316903Complete white stage 4.455
SRR8316902Silver flowering stage2.537
SRR8316904Silver flowering stage4.067
SRR8316905Silver flowering stage1.431
SRR8316906Gold flowering stage 5.326
SRR8316907Gold flowering stage 5.357
SRR8316908Gold flowering stage 5.864
SRP132670SRR6706286Control6.171
SRR6706287Light intensity 50%6.700
SRR6706288Light intensity 20%7.076
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.176
CNS0095593Slightly white alabastrum(diploid) 22.255
CNS0095594Slightly white alabastrum(diploid) 32.743
CNS0095595Whole white alabastrum(diploid) 22.555
CNS0095596Whole white alabastrum(diploid) 31.936
CNS0095597Whole white alabastrum(diploid) 42.844
CNS0095598Silvery flower (diploied) 15.788
CNS0095599Silvery flower (diploied) 24.186
CNS0095600Silvery flower (diploied) 37.363
CNS0095601Golden flower (diploid) 15.918
CNS0095602Golden flower (diploid) 27.770
CNS0095603Golden flower (diploid) 37.951
CNS0095604Slightly white alabastrum(tetraploid) 13.851
CNS0095605Slightly white alabastrum(tetraploid) 21.880
CNS0095606Slightly white alabastrum(tetraploid) 310.193
CNS0095607Whole white alabastrum(tetraploid) 11.938
CNS0095608Whole white alabastrum(tetraploid) 21.277
CNS0095609Whole white alabastrum(tetraploid) 35.322
CNS0095610Silvery flower (tetraploid) 17.882
CNS0095611Silvery flower (tetraploid) 28.605
CNS0095612Silvery flower (tetraploid) 36.489
CNS0095613Golden flower (tetraploid) 12.639
CNS0095614Golden flower (tetraploid) 26.248
CNS0095615Golden flower (tetraploid) 35.929
CRA001975CRR073297Stem 15.655
CRR073298Stem 25.432
CRR073299Stem 34.085
CRR073300Leaf 15.287
CRR073301Leaf 23.829
CRR073302Leaf 33.191
CRR073303Juvenile bud 12.775
CRR073304Juvenile bud 22.309
CRR073305Juvenile bud 34.768
CRR073306Third green 10.436
CRR073307Third green 20.584
CRR073308Third green 31.253
CRR073309Second white 11.154
CRR073310Second white 21.303
CRR073311Second white 31.739
CRR073312Silver flowering 11.008
CRR073313Silver flowering 20.699
CRR073314Silver flowering 30.795
CRR073315Gold flowering 12.061
CRR073316Gold flowering 23.792
CRR073317Gold flowering 31.169
CRR073318Tawny withering 11.755
CRR073319Tawny withering 22.596
CRR073320Tawny withering 32.940