Detail information of GWHGAAZE025508


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008223923.17.04085E-40PREDICTED: DNA ligase 4 [Prunus mume]
Swissprottr|Q9LL84|DNLI4_ARATH2E-13DNA ligase 4
trEMBLtr|M5XXE1|M5XXE1_PRUPE4E-31Uncharacterized protein {ECO:0000313|EMBL:EMJ26403.1}
TAIR10AT5G57160.14E-10DNA ligase IV

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6216979962171926-
GWHAAZE00000007mRNA6216979962171926-
GWHAAZE00000007exon6217170662171926-
GWHAAZE00000007exon6217013562170480-
GWHAAZE00000007exon6216979962170020-
GWHAAZE00000007CDS6217170662171926-
GWHAAZE00000007CDS6217013562170480-
GWHAAZE00000007CDS6216979962170020-
Transcript Sequence

Network for GWHGAAZE025508

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10777LIG4, DNL4 Non-homologous end-joining map03450

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.538
SRR3591706second leaf9.442
SRR3591707mature leaf13.025
SRR3591708Shoot apex15.223
SRR3591709Stem11.981
SRR3591710White floral bud8.847
SRR3591711White flower11.736
SRR3591712Green floral bud10.463
SRR3591713Yellow flower10.340
SRP173429 SRR8316895Juvenile bud stage 10.805
SRR8316896Juvenile bud stage 15.665
SRR8316897Juvenile bud stage 7.938
SRR8316894Third green stage 6.100
SRR8316900Third green stage 12.757
SRR8316901Third green stage 12.489
SRR8316898Complete white stage 3.415
SRR8316899Complete white stage 17.093
SRR8316903Complete white stage 7.676
SRR8316902Silver flowering stage4.854
SRR8316904Silver flowering stage6.158
SRR8316905Silver flowering stage2.814
SRR8316906Gold flowering stage 10.921
SRR8316907Gold flowering stage 8.212
SRR8316908Gold flowering stage 7.926
SRP132670SRR6706286Control12.261
SRR6706287Light intensity 50%11.089
SRR6706288Light intensity 20%10.461
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.777
CNS0095593Slightly white alabastrum(diploid) 214.568
CNS0095594Slightly white alabastrum(diploid) 314.385
CNS0095595Whole white alabastrum(diploid) 29.472
CNS0095596Whole white alabastrum(diploid) 37.354
CNS0095597Whole white alabastrum(diploid) 48.210
CNS0095598Silvery flower (diploied) 116.125
CNS0095599Silvery flower (diploied) 212.437
CNS0095600Silvery flower (diploied) 39.440
CNS0095601Golden flower (diploid) 114.880
CNS0095602Golden flower (diploid) 211.800
CNS0095603Golden flower (diploid) 311.778
CNS0095604Slightly white alabastrum(tetraploid) 111.261
CNS0095605Slightly white alabastrum(tetraploid) 210.274
CNS0095606Slightly white alabastrum(tetraploid) 319.877
CNS0095607Whole white alabastrum(tetraploid) 18.113
CNS0095608Whole white alabastrum(tetraploid) 24.771
CNS0095609Whole white alabastrum(tetraploid) 310.099
CNS0095610Silvery flower (tetraploid) 111.867
CNS0095611Silvery flower (tetraploid) 211.268
CNS0095612Silvery flower (tetraploid) 310.786
CNS0095613Golden flower (tetraploid) 18.130
CNS0095614Golden flower (tetraploid) 211.458
CNS0095615Golden flower (tetraploid) 36.391
CRA001975CRR073297Stem 116.405
CRR073298Stem 215.788
CRR073299Stem 38.604
CRR073300Leaf 114.880
CRR073301Leaf 213.879
CRR073302Leaf 35.517
CRR073303Juvenile bud 15.930
CRR073304Juvenile bud 24.986
CRR073305Juvenile bud 39.900
CRR073306Third green 11.636
CRR073307Third green 21.099
CRR073308Third green 31.776
CRR073309Second white 12.693
CRR073310Second white 22.645
CRR073311Second white 32.164
CRR073312Silver flowering 11.342
CRR073313Silver flowering 21.386
CRR073314Silver flowering 31.265
CRR073315Gold flowering 15.756
CRR073316Gold flowering 27.338
CRR073317Gold flowering 31.586
CRR073318Tawny withering 16.769
CRR073319Tawny withering 210.566
CRR073320Tawny withering 312.261