Detail information of GWHGAAZE025480


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP16750.10unnamed protein product [Coffea canephora]
COGYP_007110479.13E-14serine/threonine protein kinase
Swissprottr|Q8LKZ1|NORK_PEA1E-59Nodulation receptor kinase (Precursor)
trEMBLtr|A0A068V7M2|A0A068V7M2_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_135 {ECO:0000313|EMBL:CDP16750.1}
TAIR10AT3G26700.11E-135Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6178810761792728-
GWHAAZE00000007mRNA6178810761792728-
GWHAAZE00000007exon6179265261792728-
GWHAAZE00000007exon6179231261792363-
GWHAAZE00000007exon6179132961791511-
GWHAAZE00000007exon6179101861791226-
GWHAAZE00000007exon6178970561789831-
GWHAAZE00000007exon6178938161789471-
GWHAAZE00000007exon6178899061789208-
GWHAAZE00000007exon6178875361788885-
GWHAAZE00000007exon6178810761788370-
GWHAAZE00000007five_prime_UTR6179265261792728-
GWHAAZE00000007five_prime_UTR6179231261792363-
GWHAAZE00000007five_prime_UTR6179147161791511-
GWHAAZE00000007CDS6179132961791470-
GWHAAZE00000007CDS6179101861791226-
GWHAAZE00000007CDS6178970561789831-
GWHAAZE00000007CDS6178938161789471-
GWHAAZE00000007CDS6178899061789208-
GWHAAZE00000007CDS6178875361788885-
GWHAAZE00000007CDS6178810761788370-
Transcript Sequence

Network for GWHGAAZE025480

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07714.18PK_Tyr_Ser-Thr803623.20E-37
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-IXa

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.097
SRR3591706second leaf19.336
SRR3591707mature leaf7.249
SRR3591708Shoot apex20.893
SRR3591709Stem39.163
SRR3591710White floral bud6.000
SRR3591711White flower3.639
SRR3591712Green floral bud14.933
SRR3591713Yellow flower0.919
SRP173429 SRR8316895Juvenile bud stage 16.795
SRR8316896Juvenile bud stage 18.460
SRR8316897Juvenile bud stage 8.330
SRR8316894Third green stage 7.793
SRR8316900Third green stage 19.889
SRR8316901Third green stage 19.610
SRR8316898Complete white stage 3.701
SRR8316899Complete white stage 21.865
SRR8316903Complete white stage 6.950
SRR8316902Silver flowering stage1.442
SRR8316904Silver flowering stage2.457
SRR8316905Silver flowering stage0.892
SRR8316906Gold flowering stage 1.221
SRR8316907Gold flowering stage 1.492
SRR8316908Gold flowering stage 1.955
SRP132670SRR6706286Control14.939
SRR6706287Light intensity 50%19.018
SRR6706288Light intensity 20%19.444
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.653
CNS0095593Slightly white alabastrum(diploid) 224.078
CNS0095594Slightly white alabastrum(diploid) 316.844
CNS0095595Whole white alabastrum(diploid) 213.194
CNS0095596Whole white alabastrum(diploid) 315.171
CNS0095597Whole white alabastrum(diploid) 414.392
CNS0095598Silvery flower (diploied) 113.340
CNS0095599Silvery flower (diploied) 26.067
CNS0095600Silvery flower (diploied) 32.677
CNS0095601Golden flower (diploid) 18.957
CNS0095602Golden flower (diploid) 23.093
CNS0095603Golden flower (diploid) 33.873
CNS0095604Slightly white alabastrum(tetraploid) 119.834
CNS0095605Slightly white alabastrum(tetraploid) 218.671
CNS0095606Slightly white alabastrum(tetraploid) 333.788
CNS0095607Whole white alabastrum(tetraploid) 110.309
CNS0095608Whole white alabastrum(tetraploid) 26.813
CNS0095609Whole white alabastrum(tetraploid) 316.922
CNS0095610Silvery flower (tetraploid) 12.362
CNS0095611Silvery flower (tetraploid) 24.241
CNS0095612Silvery flower (tetraploid) 33.305
CNS0095613Golden flower (tetraploid) 12.146
CNS0095614Golden flower (tetraploid) 21.833
CNS0095615Golden flower (tetraploid) 30.960
CRA001975CRR073297Stem 127.779
CRR073298Stem 221.438
CRR073299Stem 314.555
CRR073300Leaf 129.108
CRR073301Leaf 226.358
CRR073302Leaf 319.092
CRR073303Juvenile bud 116.588
CRR073304Juvenile bud 213.858
CRR073305Juvenile bud 317.782
CRR073306Third green 17.366
CRR073307Third green 25.260
CRR073308Third green 35.635
CRR073309Second white 10.389
CRR073310Second white 20.558
CRR073311Second white 30.130
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.178
CRR073314Silver flowering 30.168
CRR073315Gold flowering 19.593
CRR073316Gold flowering 212.458
CRR073317Gold flowering 33.618
CRR073318Tawny withering 119.000
CRR073319Tawny withering 217.242
CRR073320Tawny withering 325.404